forked from howisonlab/softcite-dataset
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
2 changed files
with
274 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,179 @@ | ||
|
|
||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix owl: <http://www.w3.org/2002/07/owl#> . | ||
|
|
||
| @prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> . | ||
| @prefix doap: <http://usefulinc.com/ns/doap#> . | ||
| @prefix vivo: <http://vivoweb.org/ontology/core#> . | ||
|
|
||
| @prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> . | ||
| @prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> . | ||
| @prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> . | ||
| @prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> . | ||
| @prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> . | ||
| @prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> . | ||
|
|
||
| # https://howisonlab.github.io/softcite-dataset/pdf-files/pmc_oa_files/PMC3467590.pdf | ||
| pmcid:PMC3467590 rdf:type bioj:article ; | ||
|
|
||
| citec:has_in_text_mention pmcid:PMC3467590_SV01 ; # name in text mention like pmcid:PMC3028497_JC01, no quotes | ||
| citec:has_in_text_mention pmcid:PMC3467590_SV02 ; | ||
| citec:has_in_text_mention pmcid:PMC3467590_SV03 ; | ||
|
|
||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ; | ||
| citec:isPresent false; # true/false | ||
| ] ; | ||
| ] ; | ||
| . | ||
| pmcid:PMC3467590_SV01 rdf:type citec:in_text_mention ; # use in text mention name | ||
| citec:full_quote """GLMMwas implemented by PROC GLIMMIX in SAS and wasadjusted for race, and clinical diagnosis of hypertension ordepression.""" ; # use triple quotes | ||
|
|
||
| citec:on_pdf_page 3 ; # integer | ||
|
|
||
| citec:spans_pages false ; # true/false | ||
|
|
||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:mention_type ; | ||
| rdfs:label """algorithm""" ; # put one in triple quotes | ||
| ca:certainty 5 ; # integer | ||
| ca:memo """Google PROC GLIMMIX and it was described as a procedure for fitting the generalized linear mixed model (GLMM)""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| . | ||
| pmcid:PMC3467590_SV02 rdf:type citec:in_text_mention ; # use in text mention name | ||
| citec:full_quote """GLMMwas implemented by PROC GLIMMIX in SAS and wasadjusted for race, and clinical diagnosis of hypertension ordepression.""" ; # use triple quotes | ||
|
|
||
| citec:on_pdf_page 3 ; # integer | ||
|
|
||
| citec:spans_pages false ; # true/false | ||
|
|
||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:mention_type ; | ||
| rdfs:label """software""" ; # put one in triple quotes | ||
| ca:certainty 9 ; # integer | ||
| ca:memo """Googled it and know the SAS name from beforehand""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:software_was_used ; | ||
| citec:isPresent true; # true/false | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:software_name ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """SAS""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:version_number ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:version_date ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:url ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:creator ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| #citec:has_reference pmcid-citedFIXME: ; # name reference like pmcid-cited:a2004-40-NAT_GENET_Author-YYYY, no quotes | ||
| . | ||
| pmcid:PMC3467590_SV03 rdf:type citec:in_text_mention ; # use in text mention name | ||
| citec:full_quote """All analyseswere performed in SAS V.9.2 (Cary, North Carolina, USA)""" ; # use triple quotes | ||
|
|
||
| citec:on_pdf_page 3 ; # integer | ||
|
|
||
| citec:spans_pages false ; # true/false | ||
|
|
||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:mention_type ; | ||
| rdfs:label """software""" ; # put one in triple quotes | ||
| ca:certainty 9 ; # integer | ||
| ca:memo """Googled and has a version number in the mention""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:software_was_used ; | ||
| citec:isPresent true; # true/false | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:software_name ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """SAS""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:version_number ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """9.2""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:version_date ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:url ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:creator ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """Cary""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| #citec:has_reference pmcid-citedFIXME: ; # name reference like pmcid-cited:a2004-40-NAT_GENET_Author-YYYY, no quotes | ||
| . |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,95 @@ | ||
|
|
||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix owl: <http://www.w3.org/2002/07/owl#> . | ||
|
|
||
| @prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> . | ||
| @prefix doap: <http://usefulinc.com/ns/doap#> . | ||
| @prefix vivo: <http://vivoweb.org/ontology/core#> . | ||
|
|
||
| @prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> . | ||
| @prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> . | ||
| @prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> . | ||
| @prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> . | ||
| @prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> . | ||
| @prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> . | ||
|
|
||
| # https://howisonlab.github.io/softcite-dataset/pdf-files/pmc_oa_files/PMC3794438.pdf | ||
| pmcid:PMC3794438 rdf:type bioj:article ; | ||
|
|
||
| citec:has_in_text_mention pmcid:PMC3794438_SV01 ; # name in text mention like pmcid:PMC3028497_JC01, no quotes | ||
|
|
||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ; | ||
| citec:isPresent false; # true/false | ||
| ] ; | ||
| ] ; | ||
| . | ||
| pmcid:PMC3794438_SV01 rdf:type citec:in_text_mention ; # use in text mention name | ||
| citec:full_quote """All calculations were performed on theStatistica 10 software (StatSoft, Tulsa, OK, USA).""" ; # use triple quotes | ||
|
|
||
| citec:on_pdf_page 3 ; # integer | ||
|
|
||
| citec:spans_pages false ; # true/false | ||
|
|
||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:mention_type ; | ||
| rdfs:label """software""" ; # put one in triple quotes | ||
| ca:certainty 9 ; # integer | ||
| ca:memo """States that it is software""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:software_was_used ; | ||
| citec:isPresent true; # true/false | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:software_name ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """Statistica""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:version_number ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """10""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:version_date ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:url ; | ||
| citec:isPresent false ; # true/false | ||
| #rdfs:label FIXME ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| ca:isTargetOf | ||
| [ rdf:type ca:CodeApplication ; | ||
| ca:hasCoder "vsanchana" ; | ||
| ca:appliesCode [ rdf:type citec:creator ; | ||
| citec:isPresent true ; # true/false | ||
| rdfs:label """StatSoft""" ; # use triple quotes | ||
| ] ; | ||
| ] ; | ||
| #citec:has_reference pmcid-citedFIXME: ; # name reference like pmcid-cited:a2004-40-NAT_GENET_Author-YYYY, no quotes | ||
| . |