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Merge pull request howisonlab#249 from mjsong1201/master
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jameshowison authored Nov 6, 2017
2 parents 901ea37 + 12f8816 commit 7b1238a
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30 changes: 30 additions & 0 deletions data/individuals-mjsong1201/mjsong1201-PMC3311235.ttl
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> .
@prefix doap: <http://usefulinc.com/ns/doap#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .

@prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> .
@prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> .
@prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> .
@prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> .
@prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> .
@prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> .

# https://howisonlab.github.io/softcite-pdf-files/pdf-files/pmc_oa_files/PMC3311235.pdf
pmcid:PMC3311235 rdf:type bioj:article ;

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ;
citec:isPresent true ; # true/false
] ;
] ;


.
93 changes: 93 additions & 0 deletions data/individuals-mjsong1201/mjsong1201-PMC4649725.ttl
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> .
@prefix doap: <http://usefulinc.com/ns/doap#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .

@prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> .
@prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> .
@prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> .
@prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> .
@prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> .
@prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> .

# https://howisonlab.github.io/softcite-pdf-files/pdf-files/pmc_oa_files/PMC4649725.pdf
pmcid:PMC4649725 rdf:type bioj:article ;

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ;
citec:isPresent false; # true/false
] ;
] ;


citec:has_in_text_mention pmcid:PMC4649725_MS01 ; # name in text mention like pmcid:PMC3028497_JC01, no quotes
.
pmcid:PMC4649725_MS01 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """Analyses were carried out using SAS version 9.2 software(SAS Institute, Cary, NC).""" ; # use triple quotes

citec:on_pdf_page 2 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """it says software""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """SAS""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """version 9.2""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """SAS Institute""" ; # use triple quotes
] ;
] ;
.
155 changes: 155 additions & 0 deletions data/individuals-mjsong1201/mjsong1201-PMC5400067.ttl
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> .
@prefix doap: <http://usefulinc.com/ns/doap#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .

@prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> .
@prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> .
@prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> .
@prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> .
@prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> .
@prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> .

# https://howisonlab.github.io/softcite-pdf-files/pdf-files/pmc_oa_files/PMC5400067.pdf
pmcid:PMC5400067 rdf:type bioj:article ;

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ;
citec:isPresent false; # true/false
] ;
] ;


citec:has_in_text_mention pmcid:PMC5400067_MS01 ; # name in text mention like pmcid:PMC3028497_JC01, no quotes
citec:has_in_text_mention pmcid:PMC5400067_MS02 ;

.
pmcid:PMC5400067_MS01 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """The transcribed FGDs and interviews were thematically analysed using MAXQDA 2 software.""" ; # use triple quotes

citec:on_pdf_page 5 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """it says software""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """MAXQDA""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """2""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent false ; # true/false
] ;
] ;
.
pmcid:PMC5400067_MS02 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """Qualitative data were analysed, with MAXQDA 2 software, to identify 17 a priori dimensions ofcare and unanticipated themes that emerged during the analysis.""" ; # use triple quotes

citec:on_pdf_page 1 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """it says software""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """MAXQDA""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """2""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "mjsong1201" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent false ; # true/false
] ;
] ;
.

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