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Merge pull request howisonlab#270 from sahilshahh/master
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jameshowison authored Nov 10, 2017
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279 changes: 279 additions & 0 deletions data/individuals-sahilshahh/sahilshahh-PMC3524325.ttl
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> .
@prefix doap: <http://usefulinc.com/ns/doap#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .

@prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> .
@prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> .
@prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> .
@prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> .
@prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> .
@prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> .

# https://howisonlab.github.io/softcite-pdf-files/pdf-files/pmc_oa_files/PMC3524325.pdf
pmcid:PMC3524325 rdf:type bioj:article ;

citec:has_in_text_mention pmcid:PMC3524325_SS01 ;
citec:has_in_text_mention pmcid:PMC3524325_SS02 ;
citec:has_in_text_mention pmcid:PMC3524325_SS03 ;
citec:has_in_text_mention pmcid:PMC3524325_SS04 ;

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ;
citec:isPresent false; # true/false
] ;
] ;
.
pmcid:PMC3524325_SS01 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """For the statistical analyses, the statistical software SPSS version 16.0 for Windows (SPSS Inc., Chicago, IL) and the statistical package SAS version 9.1 for windows (SAS Institute Inc., Cary, NC, USA) were used.""" ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """It says software in the quote""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """SPSS""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """version 16.0 for Windows""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """SPSS Inc.""" ; # use triple quotes
] ;
] ;
.
pmcid:PMC3524325_SS02 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """For the statistical analyses, the statistical software SPSS version 16.0 for Windows (SPSS Inc., Chicago, IL) and the statistical package SAS version 9.1 for windows (SAS Institute Inc., Cary, NC, USA) were used.""" ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """SAS is a widely used software package""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """SAS""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """version 9.1 for windows""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """SAS Institute Inc.""" ; # use triple quotes
] ;
] ;
.
pmcid:PMC3524325_SS03 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """Additionally, the multivariable linear regression test, SPSS 16, showed a higher range of PaO2 / FiO2 at one hour after extubation and PaO2 / FiO2 at four hours after extubation in the patients with the new extubation method than that in those with the conventional extubation method (8.888 mmHg and 8.248 mmHg, respectively); there were, however, no significant differences.""" ; # use triple quotes

citec:on_pdf_page 5 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """Due to the previous mention of SPSS, I have a high certainty""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """SPSS""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """16""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent false ; # true/false
] ;
] ;
.
pmcid:PMC3524325_SS04 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """Considering confounding variables in the logistic regression test using SAS 9.1 software, we found that in almost all the time periods, PaO2 / FiO2 was higher in the new extubation method group; however, only PaO2 / FiO2four hours after extubation < 225 between the two groups was statistically significant (Table 6).""" ; # use triple quotes

citec:on_pdf_page 7 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """Says software in the quote""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """SAS""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """9.1""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "sahilshahh" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent false ; # true/false
] ;
] ;
.
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