Commits

Commits on Feb 1, 2023

Make several Funcotator methods and fields protected so it is easiest to extend the tool (broadinstitute#8166 )
bbimber
authored

Commits on Dec 16, 2022

Made several Funcotator methods and fields protected so it is easier to extend the tool (broadinstitute#8124 )
bbimber
authored

Commits on Jun 15, 2021

Make allow MultiVariantWalkerGroupedOnStart sublcasses to view/set ignoreIntervalsOutsideStart (broadinstitute#7301 )
bbimber
authored

Commits on Jun 9, 2021

Add pedigree file getter to PedigreeAnnotation (broadinstitute#7277 )
bbimber
authored

Commits on May 4, 2021

Allow VariantEvalArgCollection to supply PedigreeValidationType (broadinstitute#7240 )
bbimber
authored

Commits on May 3, 2021

Contig stratification should use contigs from user-defined intervals (broadinstitute#7238 )
bbimber
authored

Commits on Apr 30, 2021

Switch VariantEval to MultiVariantWalkerGroupedOnStart. (broadinstitute#6973 )
bbimber
authored

Commits on Apr 28, 2021

Track the source of variants in MultiVariantWalkers. (broadinstitute#7219 )
bbimber
authored

Commits on Feb 23, 2021

Make InfoFieldAnnotation/GenotypeAnnotation into interfaces. (broadinstitute#7041 )
bbimber
authored

Commits on Feb 5, 2020

Remove extraneous alleles in GenotypeGVCFs force-output mode (broadinstitute#6406 )
bbimber
authored

Commits on Jun 21, 2019

Refactor VariantEval methods to allow subclass to override (broadinstitute#5998 )

bbimber
authored and
cmnbroad
committed

Commits on Nov 26, 2018

Add description getter and javadoc in GATKReportTable (broadinstitute#5443 )

bbimber
authored and
cmnbroad
committed

Commits on Nov 21, 2018

Port of GATK3 VariantEval to GATK4 (broadinstitute#5043 )

bbimber
authored and
cmnbroad
committed

Commits on Jul 18, 2018

Engine changes related to migration of GATK3 VariantEval to GATK4 (broadinstitute#4495 )

bbimber
authored and
cmnbroad
committed