updated with new theme

opencobra · Aug 27, 2024 · b7ef88a · b7ef88a
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diff --git a/curationTool/ECBLAST_temp_AAM.xml b/curationTool/ECBLAST_temp_AAM.xml
@@ -2,7 +2,7 @@
 <EC_BLAST>
   <ANNOTATION>
     <MAPPING STATUS="SELECTED">
-      <AAM>[O:1]=[O:2]&gt;&gt;[O:1]=[O:2]</AAM>
+      <AAM>[CH2:1]([CH2:4][CH2:7][CH2:9][CH2:12][CH2:13][CH2:15][CH3:16])[CH:34]=[CH:32][CH2:29][CH2:28][CH2:26][CH2:19][CH2:17][CH2:14][CH2:11][C:8]([O:6][CH2:5][CH:3]([OH:2])[CH2:18][O:20][P:21](=[O:22])([O-:23])[O:24][CH2:25][CH2:27][N+:30]([CH3:31])([CH3:33])[CH3:35])=[O:10].[Na+:36]&gt;&gt;[CH2:1]([CH2:4][CH2:7][CH2:9][CH2:12][CH2:13][CH2:15][CH3:16])[CH:34]=[CH:32][CH2:29][CH2:28][CH2:26][CH2:19][CH2:17][CH2:14][CH2:11][C:8]([O:6][CH2:5][CH:3]([OH:2])[CH2:18][O:20][P:21](=[O:22])([O-:23])[O:24][CH2:25][CH2:27][N+:30]([CH3:31])([CH3:35])[CH3:33])=[O:10].[Na+:36]</AAM>
       <RANK_REACTANT>{}</RANK_REACTANT>
       <RANK_PRODUCT>{}</RANK_PRODUCT>
     </MAPPING>

diff --git a/curationTool/media/images/placeholder_image.png b/curationTool/media/images/placeholder_image.png
diff --git a/curationTool/media/images/visual1.png b/curationTool/media/images/visual1.png
diff --git a/curationTool/media/images/visual10.png b/curationTool/media/images/visual10.png
diff --git a/curationTool/media/images/visual11.png b/curationTool/media/images/visual11.png
diff --git a/curationTool/media/images/visual12.png b/curationTool/media/images/visual12.png
diff --git a/curationTool/media/images/visual13.png b/curationTool/media/images/visual13.png
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diff --git a/curationTool/media/images/visual15.png b/curationTool/media/images/visual15.png
diff --git a/curationTool/media/images/visual16.png b/curationTool/media/images/visual16.png
diff --git a/curationTool/media/images/visual17.png b/curationTool/media/images/visual17.png
diff --git a/curationTool/media/images/visual18.png b/curationTool/media/images/visual18.png
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diff --git a/curationTool/media/images/visual2.png b/curationTool/media/images/visual2.png
diff --git a/curationTool/media/images/visual20.png b/curationTool/media/images/visual20.png
diff --git a/curationTool/media/images/visual21.png b/curationTool/media/images/visual21.png
diff --git a/curationTool/media/images/visual22.png b/curationTool/media/images/visual22.png
diff --git a/curationTool/media/images/visual24.png b/curationTool/media/images/visual24.png
diff --git a/curationTool/media/images/visual25.png b/curationTool/media/images/visual25.png
diff --git a/curationTool/media/images/visual29.png b/curationTool/media/images/visual29.png
diff --git a/curationTool/media/images/visual3.png b/curationTool/media/images/visual3.png
diff --git a/curationTool/media/images/visual33.png b/curationTool/media/images/visual33.png
diff --git a/curationTool/media/images/visual35.png b/curationTool/media/images/visual35.png
diff --git a/curationTool/media/images/visual38.png b/curationTool/media/images/visual38.png
diff --git a/curationTool/media/images/visual39.png b/curationTool/media/images/visual39.png
diff --git a/curationTool/media/images/visual4.png b/curationTool/media/images/visual4.png
diff --git a/curationTool/media/images/visual40.png b/curationTool/media/images/visual40.png
diff --git a/curationTool/media/images/visual41.png b/curationTool/media/images/visual41.png
diff --git a/curationTool/media/images/visual42.png b/curationTool/media/images/visual42.png
diff --git a/curationTool/media/images/visual46.png b/curationTool/media/images/visual46.png
diff --git a/curationTool/media/images/visual48.png b/curationTool/media/images/visual48.png
diff --git a/curationTool/media/images/visual5.png b/curationTool/media/images/visual5.png
diff --git a/curationTool/media/images/visual52.png b/curationTool/media/images/visual52.png
diff --git a/curationTool/media/images/visual54.png b/curationTool/media/images/visual54.png
diff --git a/curationTool/media/images/visual55.png b/curationTool/media/images/visual55.png
diff --git a/curationTool/media/images/visual56.png b/curationTool/media/images/visual56.png
diff --git a/curationTool/media/images/visual57.png b/curationTool/media/images/visual57.png
diff --git a/curationTool/media/images/visual58.png b/curationTool/media/images/visual58.png
diff --git a/curationTool/media/images/visual8.png b/curationTool/media/images/visual8.png
diff --git a/curationTool/media/rxn_files/rxn1.rxn b/curationTool/media/rxn_files/rxn1.rxn
@@ -4,20 +4,19 @@ $RXN
 
   1  1
 $MOL
-Oxygen
-  RDT     08222418022D
+Hydrogen Ion
+  RDT     08232411062D
 
-  2  1  0  0  0  0  0  0  0  0999 V2000
-    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  1  0  0
-    1.5000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  2  0  0
-  1  2  2  0  0  0  0 
+  1  0  0  0  0  0  0  0  0  0999 V2000
+    0.0000    0.0000    0.0000 H   0  3  0  0  0  0  0  0  0  1  0  0
+M  CHG  1   1   1
 M  END
 $MOL
 Oxygen
-  RDT     08222418022D
+  RDT     08232411062D
 
   2  1  0  0  0  0  0  0  0  0999 V2000
-    1.5000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  1  0  0
     0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  2  0  0
-  2  1  2  0  0  0  0 
+    1.5000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  3  0  0
+  1  2  2  0  0  0  0 
 M  END
diff --git a/curationTool/media/rxn_files/rxn10.rxn b/curationTool/media/rxn_files/rxn10.rxn
@@ -1,319 +1,22 @@
 $RXN
 
-  EC-BLAST     smiles
+  EC-BLAST     temp
 
   1  1
 $MOL
-25hvitd2
-  RDT     02082416552D
+Hydrogen Ion
+  RDT     08242412572D
 
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+M  CHG  1   1   1
 M  END
 $MOL
-2425dhvitd2
-  RDT     02082416552D
+Oxygen
+  RDT     08242412572D
 
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