Added missing build files.

.gitignore

@@ -19,9 +19,8 @@ target
 /modules/api-gateway/docker/binary/sepal-api-gateway.jar
 
 #Sepal frontend
-/modules/*/frontend/dist/
-/modules/*/frontend/node/
-/modules/gui/frontend/node/
+/modules/*/frontend/build
+/modules/gui/frontend/node-*
 /modules/gui/frontend/node_modules/
 
 #Vagrant

build.gradle

@@ -0,0 +1,41 @@
+allprojects  {
+  apply plugin: 'maven'
+  apply plugin: 'groovy'
+
+  group = 'org.openforis.sepal'
+  version = '1.0.0-SNAPSHOT'
+}
+
+subprojects {
+  apply plugin: 'java'
+  sourceCompatibility = 1.8
+  targetCompatibility = 1.8
+  tasks.withType(JavaCompile) {
+    options.encoding = 'UTF-8'
+  }
+  test {
+    testLogging {
+      exceptionFormat = 'full'
+    }
+  }
+
+
+  tasks.withType(Test) {
+    maxParallelForks = 1
+  }
+
+
+
+  repositories {
+    mavenLocal()
+
+    maven { url "http://www.openforis.org/nexus/content/groups/public/" }
+    maven { url "http://jcenter.bintray.com/" }
+    maven { url "http://repo.maven.apache.org/maven2" }
+  }
+
+
+  dependencies {
+    testCompile group: 'org.spockframework', name: 'spock-core', version:'1.2-groovy-2.5'
+  }
+}

common-test/build.gradle

@@ -0,0 +1,11 @@
+
+description = ''
+dependencies {
+  compile project(':sepal-common')
+    compile group: 'com.h2database', name: 'h2', version:'1.4.191'
+    compile group: 'org.orbisgis', name: 'h2spatial-ext', version:'1.2.3'
+    compile group: 'cglib', name: 'cglib-nodep', version:'3.2.0'
+    compile group: 'org.flywaydb', name: 'flyway-core', version:'3.2.1'
+    compile group: 'com.bitmechanic', name: 'dumbster', version:'1.9.0.2'
+    compile group: 'org.spockframework', name: 'spock-core', version:'1.2-groovy-2.5'
+}

common/build.gradle

@@ -0,0 +1,30 @@
+description = ''
+dependencies {
+    compile group: 'org.codehaus.groovy', name: 'groovy-all', version: '2.5.3'
+    compile group: 'org.codehaus.groovy', name: 'groovy-dateutil', version: '2.5.3'
+    compile group: 'ch.qos.logback', name: 'logback-classic', version: '1.1.5'
+    compile group: 'org.slf4j', name: 'slf4j-api', version: '1.7.16'
+    compile group: 'org.slf4j', name: 'jul-to-slf4j', version: '1.7.16'
+    compile group: 'org.slf4j', name: 'jcl-over-slf4j', version: '1.7.16'
+    compile group: 'javax.mail', name: 'mail', version: '1.4.7'
+    compile group: 'org.apache.commons', name: 'commons-compress', version: '1.10'
+    compile group: 'commons-io', name: 'commons-io', version: '2.4'
+    compile group: 'com.mchange', name: 'c3p0', version: '0.9.5.2'
+    compile group: 'mysql', name: 'mysql-connector-java', version: '5.1.38'
+    compile group: 'io.undertow', name: 'undertow-servlet', version: '1.4.11.Final'
+    compile group: 'org.mortbay.jetty.alpn', name: 'alpn-boot', version: '8.1.7.v20160121'
+    compile group: 'org.fao.foris.groovy.mvc', name: 'groovy-mvc', version: '0.6.2'
+    compile group: 'org.apache.commons', name: 'commons-csv', version: '1.4'
+    compile(group: 'org.codehaus.groovy.modules.http-builder', name: 'http-builder', version: '0.7.1') {
+        exclude(module: 'commons-logging')
+        exclude(module: 'httpclient')
+    }
+    compile group: 'org.apache.httpcomponents', name: 'httpclient', version: '4.5.1'
+    compile group: 'org.flywaydb', name: 'flyway-core', version: '4.0.3'
+    compile group: 'org.apache.kafka', name: 'kafka-clients', version: '2.0.0'
+
+    compile group: 'javax.xml.bind', name: 'jaxb-api', version: '2.2.11'
+    compile group: 'com.sun.xml.bind', name: 'jaxb-core', version: '2.2.11'
+    compile group: 'com.sun.xml.bind', name: 'jaxb-impl', version: '2.2.11'
+    compile group: 'javax.activation', name: 'activation', version: '1.1.1'
+}

gradle/wrapper/gradle-wrapper.properties

@@ -0,0 +1,5 @@
+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+distributionUrl=https\://services.gradle.org/distributions/gradle-4.10.2-bin.zip
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists

gradlew

@@ -0,0 +1,172 @@
+#!/usr/bin/env sh
+
+##############################################################################
+##
+##  Gradle start up script for UN*X
+##
+##############################################################################
+
+# Attempt to set APP_HOME
+# Resolve links: $0 may be a link
+PRG="$0"
+# Need this for relative symlinks.
+while [ -h "$PRG" ] ; do
+    ls=`ls -ld "$PRG"`
+    link=`expr "$ls" : '.*-> \(.*\)$'`
+    if expr "$link" : '/.*' > /dev/null; then
+        PRG="$link"
+    else
+        PRG=`dirname "$PRG"`"/$link"
+    fi
+done
+SAVED="`pwd`"
+cd "`dirname \"$PRG\"`/" >/dev/null
+APP_HOME="`pwd -P`"
+cd "$SAVED" >/dev/null
+
+APP_NAME="Gradle"
+APP_BASE_NAME=`basename "$0"`
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS=""
+
+# Use the maximum available, or set MAX_FD != -1 to use that value.
+MAX_FD="maximum"
+
+warn () {
+    echo "$*"
+}
+
+die () {
+    echo
+    echo "$*"
+    echo
+    exit 1
+}
+
+# OS specific support (must be 'true' or 'false').
+cygwin=false
+msys=false
+darwin=false
+nonstop=false
+case "`uname`" in
+  CYGWIN* )
+    cygwin=true
+    ;;
+  Darwin* )
+    darwin=true
+    ;;
+  MINGW* )
+    msys=true
+    ;;
+  NONSTOP* )
+    nonstop=true
+    ;;
+esac
+
+CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
+
+# Determine the Java command to use to start the JVM.
+if [ -n "$JAVA_HOME" ] ; then
+    if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
+        # IBM's JDK on AIX uses strange locations for the executables
+        JAVACMD="$JAVA_HOME/jre/sh/java"
+    else
+        JAVACMD="$JAVA_HOME/bin/java"
+    fi
+    if [ ! -x "$JAVACMD" ] ; then
+        die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+    fi
+else
+    JAVACMD="java"
+    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+fi
+
+# Increase the maximum file descriptors if we can.
+if [ "$cygwin" = "false" -a "$darwin" = "false" -a "$nonstop" = "false" ] ; then
+    MAX_FD_LIMIT=`ulimit -H -n`
+    if [ $? -eq 0 ] ; then
+        if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
+            MAX_FD="$MAX_FD_LIMIT"
+        fi
+        ulimit -n $MAX_FD
+        if [ $? -ne 0 ] ; then
+            warn "Could not set maximum file descriptor limit: $MAX_FD"
+        fi
+    else
+        warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
+    fi
+fi
+
+# For Darwin, add options to specify how the application appears in the dock
+if $darwin; then
+    GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
+fi
+
+# For Cygwin, switch paths to Windows format before running java
+if $cygwin ; then
+    APP_HOME=`cygpath --path --mixed "$APP_HOME"`
+    CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
+    JAVACMD=`cygpath --unix "$JAVACMD"`
+
+    # We build the pattern for arguments to be converted via cygpath
+    ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
+    SEP=""
+    for dir in $ROOTDIRSRAW ; do
+        ROOTDIRS="$ROOTDIRS$SEP$dir"
+        SEP="|"
+    done
+    OURCYGPATTERN="(^($ROOTDIRS))"
+    # Add a user-defined pattern to the cygpath arguments
+    if [ "$GRADLE_CYGPATTERN" != "" ] ; then
+        OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
+    fi
+    # Now convert the arguments - kludge to limit ourselves to /bin/sh
+    i=0
+    for arg in "$@" ; do
+        CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
+        CHECK2=`echo "$arg"|egrep -c "^-"`                                 ### Determine if an option
+
+        if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then                    ### Added a condition
+            eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
+        else
+            eval `echo args$i`="\"$arg\""
+        fi
+        i=$((i+1))
+    done
+    case $i in
+        (0) set -- ;;
+        (1) set -- "$args0" ;;
+        (2) set -- "$args0" "$args1" ;;
+        (3) set -- "$args0" "$args1" "$args2" ;;
+        (4) set -- "$args0" "$args1" "$args2" "$args3" ;;
+        (5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
+        (6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
+        (7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
+        (8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
+        (9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
+    esac
+fi
+
+# Escape application args
+save () {
+    for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done
+    echo " "
+}
+APP_ARGS=$(save "$@")
+
+# Collect all arguments for the java command, following the shell quoting and substitution rules
+eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS"
+
+# by default we should be in the correct project dir, but when run from Finder on Mac, the cwd is wrong
+if [ "$(uname)" = "Darwin" ] && [ "$HOME" = "$PWD" ]; then
+  cd "$(dirname "$0")"
+fi
+
+exec "$JAVACMD" "$@"

gradlew.bat

@@ -0,0 +1,84 @@
+@if "%DEBUG%" == "" @echo off
+@rem ##########################################################################
+@rem
+@rem  Gradle startup script for Windows
+@rem
+@rem ##########################################################################
+
+@rem Set local scope for the variables with windows NT shell
+if "%OS%"=="Windows_NT" setlocal
+
+set DIRNAME=%~dp0
+if "%DIRNAME%" == "" set DIRNAME=.
+set APP_BASE_NAME=%~n0
+set APP_HOME=%DIRNAME%
+
+@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+set DEFAULT_JVM_OPTS=
+
+@rem Find java.exe
+if defined JAVA_HOME goto findJavaFromJavaHome
+
+set JAVA_EXE=java.exe
+%JAVA_EXE% -version >NUL 2>&1
+if "%ERRORLEVEL%" == "0" goto init
+
+echo.
+echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+echo.
+echo Please set the JAVA_HOME variable in your environment to match the
+echo location of your Java installation.
+
+goto fail
+
+:findJavaFromJavaHome
+set JAVA_HOME=%JAVA_HOME:"=%
+set JAVA_EXE=%JAVA_HOME%/bin/java.exe
+
+if exist "%JAVA_EXE%" goto init
+
+echo.
+echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
+echo.
+echo Please set the JAVA_HOME variable in your environment to match the
+echo location of your Java installation.
+
+goto fail
+
+:init
+@rem Get command-line arguments, handling Windows variants
+
+if not "%OS%" == "Windows_NT" goto win9xME_args
+
+:win9xME_args
+@rem Slurp the command line arguments.
+set CMD_LINE_ARGS=
+set _SKIP=2
+
+:win9xME_args_slurp
+if "x%~1" == "x" goto execute
+
+set CMD_LINE_ARGS=%*
+
+:execute
+@rem Setup the command line
+
+set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
+
+@rem Execute Gradle
+"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS%
+
+:end
+@rem End local scope for the variables with windows NT shell
+if "%ERRORLEVEL%"=="0" goto mainEnd
+
+:fail
+rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
+rem the _cmd.exe /c_ return code!
+if  not "" == "%GRADLE_EXIT_CONSOLE%" exit 1
+exit /b 1
+
+:mainEnd
+if "%OS%"=="Windows_NT" endlocal
+
+:omega

modules/api-gateway/build.gradle

@@ -0,0 +1,35 @@
+def mainClassName = 'org.openforis.sepal.Main'
+description = ''
+
+apply plugin: 'java'
+
+dependencies {
+    compile project(':sepal-common')
+    compile group: 'org.bouncycastle', name: 'bcpkix-jdk15on', version: '1.55'
+    testCompile project(':sepal-common-test')
+}
+
+jar {
+    manifest {
+        attributes 'Main-Class': mainClassName
+    }
+    from {
+        configurations.compile.collect { it.isDirectory() ? it : zipTree(it) }
+    }
+}
+
+task copyJar(type: Copy) {
+    println "${libsDir}/${project.name}-${version}.jar"
+    from file("${libsDir}/${project.name}-${version}.jar")
+    into file("${projectDir}/docker/binary")
+    rename "${project.name}-${version}.jar", "${project.name}.jar"
+}
+
+build.dependsOn(copyJar)
+
+task runDev(type: JavaExec) {
+    classpath = sourceSets.main.runtimeClasspath + sourceSets.test.runtimeClasspath
+    main = 'manual.TestMain'
+    systemProperties(System.getProperties())
+}
+//  ./gradlew :sepal-api-gateway:runDev -DconfigDir=/path/to/config/dir/api-gateway