HudsonAlpha Institute for Biotechnology

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30 repositories

Generate-PRS
Public
Shell
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
jasmine_sv_annotations
Public
A pipeline to merge 2 or more sample SV VCFs into a consensus set and annotate with frequency resources with merging via jasmine
Python
•
MIT License
•0•0•0•0•Updated Aug 19, 2024Aug 19, 2024
Check-Concordance
Public
Shell
•0•0•0•0•Updated Aug 6, 2024Aug 6, 2024
PRS-Pipeline
Public
R
•1•0•0•0•Updated Jul 24, 2024Jul 24, 2024
igv-grapher
Public
Given a BED file and either a bed file of genomic regions or VCF of structural variant calls, use IGV in headless mode to make graphs.
Python
•
MIT License
•0•2•0•0•Updated Jul 24, 2024Jul 24, 2024
STEVE
Public
Python
•
Apache License 2.0
•1•10•0•0•Updated Mar 7, 2024Mar 7, 2024
Post-Imputation-Pipeline
Public
Shell
•0•0•0•0•Updated Jul 26, 2023Jul 26, 2023
rust-fastleng
Public
a fastx parser for generating sequence length metrics
rust genomics next-generation-sequencing fasta fastq quality-metrics long-read-sequencing
Rust
•
Other
•0•2•0•0•Updated Apr 20, 2023Apr 20, 2023
fmlrc2
Public
genomics bwt error-correction long-read-sequencing rust
Rust
•
Apache License 2.0
•5•45•0•0•Updated Mar 19, 2023Mar 19, 2023
poison_exon_variant_analysis
Public
This repository details the poison exon analysis detailed in Felker et al.
R
•
MIT License
•0•0•0•0•Updated Mar 8, 2023Mar 8, 2023
rust-msbwt
Public
place for building up a msbwt resource in Rust
genomics next-generation-sequencing bwt msbwt rust
Rust
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Apache License 2.0
•2•9•2•0•Updated Feb 1, 2023Feb 1, 2023
Pre-Imputation-QC-Pipeline
Public
Shell
•1•0•0•0•Updated Sep 30, 2022Sep 30, 2022
CSL_public_benchmark
Public
Location of public benchmarking; primarily final results
Shell
•
Apache License 2.0
•0•18•0•0•Updated Jun 10, 2022Jun 10, 2022
postgres-operator-examples
Public
Examples for deploying applications with PGO, the Postgres Operator from Crunchy Data
Smarty
•
Apache License 2.0
•4.9k•0•0•0•Updated Oct 8, 2021Oct 8, 2021
k3s-ansible
Public
HTML
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Apache License 2.0
•833•0•0•0•Updated Sep 19, 2021Sep 19, 2021
mixoviz
Public
Detection and visualization of 2n/3n mixoploidy from a VCF
Python
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Other
•2•2•0•0•Updated May 20, 2021May 20, 2021
simple_cromwell_example
Public
An example WDL workflow, input json, and croo json to demonstrate use of HudsonAlpha's Cromwell CLI
WDL
•0•0•0•0•Updated Apr 8, 2020Apr 8, 2020
Python2_3_Conversion
Public
Repo for the python conversion work
0•0•0•0•Updated Nov 11, 2019Nov 11, 2019
VarSight
Public
Python
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Other
•3•10•0•0•Updated Oct 21, 2019Oct 21, 2019
UDN_SV_export
Public
MIT License
•1•1•0•0•Updated May 21, 2019May 21, 2019
LayeredGraph
Public
Methods for building layered graphs and running graph traversal algorithms
Python
•
Other
•2•0•0•0•Updated Jan 19, 2019Jan 19, 2019
synergy
Public
Community for developers of open-source projects on HPE Synergy and Image Streamer
docker synergy oneview hpe-synergy image-streamer
Shell
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MIT License
•1•4•0•0•Updated Jul 5, 2018Jul 5, 2018
R2DGC
Public
R
•
Other
•0•0•0•0•Updated Aug 29, 2017Aug 29, 2017
auth0-sso-dashboard-extension
Public
JavaScript
•36•0•0•0•Updated May 26, 2017May 26, 2017
skills-pe
Public
Skills practical exercise for interview candidates
6•0•0•0•Updated Jan 15, 2017Jan 15, 2017
aRNAPipe
Public
Python
•
MIT License
•6•12•2•0•Updated Dec 14, 2016Dec 14, 2016
dd-agent
Public
Datadog Agent
Python
•
Other
•813•0•0•0•Updated Apr 14, 2016Apr 14, 2016
MethylDeconBloodSubtypes
Public
R
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Nov 23, 2015Nov 23, 2015
demo_apps
Public
JavaScript
•248•0•0•0•Updated Apr 9, 2015Apr 9, 2015
policies
Public
Catalyze HIPAA Policy Documentation
Other
•329•0•0•0•Updated Apr 2, 2015Apr 2, 2015