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    22 repositories

    • wntcart

      Public
      Machine Learning to find novel WNT/beta-catenin target genes
      0•0•0•0•Updated Nov 12, 2021Nov 12, 2021

    • basic_template

      Public template
      Basic template for my research projects
      TeX
      •
      MIT License
      •22•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • PocketPCR

      Public
      Pocket size USB powered PCR Thermo Cycler
      C++
      •
      GNU General Public License v3.0
      •42•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • falcon

      Public
      A tool to infer metagenomic composition of ancient DNA
      C
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Feb 5, 2019Feb 5, 2019

    • learning-machine-learning

      Public
      Code produced by the workshop "Learning Machine Learning" at Istanbul University
      Jupyter Notebook
      •0•2•0•0•Updated Nov 21, 2018Nov 21, 2018

    • Scientific-Paper-Tutorial

      Public
      Instructions for creating a Scientific Paper with Pandoc/Markdown
      TeX
      •4•0•0•0•Updated Jul 26, 2018Jul 26, 2018

    • Bracken

      Public
      Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
      Python
      •
      GNU General Public License v3.0
      •52•0•0•0•Updated Mar 5, 2018Mar 5, 2018

    • gargammel

      Public
      gargammel is an ancient DNA simulator
      C++
      •16•0•0•0•Updated Jan 30, 2018Jan 30, 2018

    • prophyle

      Public
      Accurate, resource-frugal and deterministic DNA classifier.
      Python
      •
      MIT License
      •5•0•0•0•Updated Jan 24, 2018Jan 24, 2018

    • homebrew-science

      Public
      💀 Homebrew/science (deprecated)
      Other
      •797•0•0•0•Updated Jan 19, 2018Jan 19, 2018

    • reprDB

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jan 2, 2018Jan 2, 2018

    • SuperClass

      Public
      Development repository of SuperClass SPT Classification
      Python
      •0•0•0•0•Updated Oct 7, 2017Oct 7, 2017

    • Seq-Gen

      Public
      Sequence simulator
      C
      •17•0•0•0•Updated Jun 27, 2017Jun 27, 2017

    • Metaviro-II

      Public
      Repository of the Metaviro-II Machine Learning project
      Python
      •0•0•0•0•Updated Jun 15, 2017Jun 15, 2017

    • kraken

      Public
      Kraken taxonomic sequence classification system
      C++
      •
      GNU General Public License v3.0
      •103•0•0•0•Updated May 30, 2017May 30, 2017

    • datagrowthrates

      Public
      Tracking genomics data growth: GenBank, SRA, and RefSeq
      R
      •1•0•0•0•Updated May 22, 2017May 22, 2017

    • KmerInShort

      Public
      short kmer counter
      C++
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Nov 14, 2016Nov 14, 2016

    • fastx_toolkit

      Public
      FASTA/FASTQ pre-processing programs
      C
      •
      Other
      •60•0•0•0•Updated Oct 25, 2016Oct 25, 2016

    • mapDamage

      Public
      mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
      Python
      •
      MIT License
      •12•0•0•0•Updated Aug 10, 2016Aug 10, 2016

    • Jellyfish

      Public
      A fast multi-threaded k-mer counter
      C++
      •
      GNU General Public License v3.0
      •137•0•0•0•Updated Aug 1, 2016Aug 1, 2016

    • PhyloSift

      Public
      Phylogenetic and taxonomic analysis for genomes and metagenomes
      Perl
      •18•0•0•0•Updated Feb 17, 2016Feb 17, 2016

    • nbc

      Public
      Naive Bayes Classification Tool
      Standard ML
      •
      Other
      •1•0•0•0•Updated Jun 3, 2013Jun 3, 2013