scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integr…

Secretory Pathway Reconstruction for Human, CHO, and Mouse

Code for StanDep Paper

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

Hacktoberfest 2023 OPEN FIRST Pull Request - FREE T-SHIRT🎉

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Set…

COBRApy is a package for constraint-based modeling of metabolic networks.