update

pandurang-kolekar · Sep 6, 2024 · e20064f · e20064f
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diff --git a/docs/content/Linux_Art/conda.rst b/docs/content/Linux_Art/conda.rst
@@ -33,9 +33,6 @@ Commonly used python libraries
 
 .. code:: bash
 
-	import matplotlib
-	matplotlib.rcParams['pdf.fonttype'] = 42
-	matplotlib.rcParams['ps.fonttype'] = 42
 	import pandas as pd
 	import numpy as np
 	import scipy.stats as sts
@@ -61,6 +58,12 @@ Commonly used python libraries
 	from Levenshtein import distance
 	pd.options.display.max_columns = 100
 	pd.options.display.max_rows = 100
+	import matplotlib
+	matplotlib.rcParams['pdf.fonttype'] = 42
+	matplotlib.rcParams['ps.fonttype'] = 42
+	import warnings
+	warnings.filterwarnings("ignore")
+
 
 Ignore python warning
 

diff --git a/docs/content/NGS_pipelines/atac_starr_seq.rst b/docs/content/NGS_pipelines/atac_starr_seq.rst
@@ -74,6 +74,16 @@ Usage
 
 	run_lsf.py -f fastq.tsv -p atac_starr_seq --MAPQ 0 --macs_genome hs -g hg19
 
+For custom genome
+----------------
+
+.. code:: bash
+
+	run_lsf.py -f fastq.tsv -p atac_starr_seq --MAPQ 0 --macs_genome hs -g custom --bowtie2_index YOUR_PATH
+
+Applies to any ``-p`` pipelines below.
+
+
 
 For strand separated results, run:
 ----------------------------------