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Commits on Apr 10, 2013

• r374: fix - clipping penalty not always working

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Commits on Mar 5, 2013

• r323: added Z-dropoff, a variant of blast's X-drop

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Commits on Mar 4, 2013

• code backup; more changes coming later

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Commits on Feb 28, 2013

• more documentation in ksw.h

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• r306: introduce clipping penalty

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Commits on Feb 12, 2013

• updated to the latest ksw; NOT TESTED YET!!!

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Commits on Feb 8, 2013

• Don't use narrow band.

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Commits on Feb 5, 2013

• towards reimplementing banded NW alignment

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Commits on Feb 4, 2013

• fixed a couple of leaks; buggy atm

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• sw extension works for the simplest case

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Commits on Feb 3, 2013

• code backup; it is wrong

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Commits on Nov 6, 2011

• mate rescue seems working (not MT)

  

  Heng Li

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