Add command for individual templates #162

	name: CI

	on: [push, pull_request]

	jobs:
	test:
	timeout-minutes: 15
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.9]
	defaults:
	run:
	shell: bash -l {0} # a login shell is required for conda activation
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: cache-conda
	uses: actions/cache@v3
	env:
	CACHE_NUMBER: 0
	with:
	path: ~/conda_pkgs_dir
	key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}

	- name: Create Conda environment
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniconda-version: "latest"
	# environment-file: conda-linux-64.lock; waiting for conda update
	environment-file: environment.yml
	use-only-tar-bz2: true
	activate-environment: "nbis"

	- name: Echo environment
	run: \|
	echo "CONDA_PREFIX: $CONDA_PREFIX"
	conda list
	conda env list

	- name: Install test dependencies
	run: conda install -c conda-forge pytest pip tox pylint

	- name: Install R revealjs
	run: R -e "install.packages('revealjs', repos='https://cran.rstudio.com/')"

	- name: Install nbis-project-admin
	run: pip install --no-deps .

	- name: Run tests
	run: pytest

	- name: Run tox to test installation of project
	run: python -m tox -e project

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