Stylus pen input for Java

Ressources of histopathology datasets

QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

QuPath extension for Segment Anything Model (SAM)

Segment Anything Model API

AI Toolkit for Healthcare Imaging

A generic next-generation Java library for image processing

Image processing algorithms for ImgLib2

an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

Read and write TIFF files

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

Gradle plugins to automate the build process of JavaCPP and JavaCV

Create a custom runtime image of your non-modular application

Java library for parsing and rendering CommonMark (Markdown)

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

TiffSlide - cloud native openslide-python replacement based on tifffile

ImgLib2 RealTransform brought to QuPath

Supporting files for the Science study.

Create beautiful, publication-quality books and documents from computational content.

QuPath - Open-source bioimage analysis for research

An Engine-Agnostic Deep Learning Framework in Java

Specification for the bioimage.io model description file.

Java specific core utilities for interpretation of specification files of the bioimage model zoo

Website for codebender.org

Intel OpenVINO extension for QuPath, a digital pathology platform