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v0.2.1-beta

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@philres philres released this 13 Jan 09:54
· 138 commits to master since this release
  • Fixes for circular reference genomes
  • Memory corruption fixed
  • Filter for random short alignments added
  • Dynamic programming approach for choosing best combination of mapped
    segments (thanks to @bqminh)
  • Alignment computation speedup with SSE instructions (thanks to
    @smolkmo)
  • Several memory leaks fixed
  • Small duplication detection improved
  • --min-residues/-R changed set to 25% (default). All reads that have
    less than 25% mapped are reported as unmapped per default
  • --max-segments added. Max number of segments reported for a single
    read