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Python scripts for RayStation treatment planning system

Python 25 7 Updated Sep 10, 2024

PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion

Python 48 5 Updated Dec 9, 2024

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

Python 208 58 Updated Jan 9, 2025

what I taught in Growthhackers SNU

Jupyter Notebook 1 5 Updated Apr 25, 2020

A set of utilities for working with DICOM files

Python 47 19 Updated Nov 17, 2021

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Python 1,624 264 Updated Jan 21, 2025

MOnte carlo code for QUIck proton dose calculation

C++ 24 7 Updated May 21, 2024

VIP cheatsheets for Stanford's CS 229 Machine Learning

17,850 3,987 Updated May 20, 2020

DICOM export TomoTherapy plans from patient archives

MATLAB 6 4 Updated Jul 5, 2017

Financial data reader

Jupyter Notebook 1,219 371 Updated Sep 9, 2024

A GUI to simplify and streamline the plotting and analysis of medical physics simulations

Python 18 2 Updated Dec 4, 2024

Add individual TOPAS DICOM doses, scale them to absolute doses, and compare to calculated TPS doses.

Python 6 2 Updated Nov 24, 2023

Read, modify and write DICOM files with python code

Python 1,942 484 Updated Jan 20, 2025

Plugins repository for dicompyler

Python 11 11 Updated Feb 24, 2018

A library of core radiation therapy modules for DICOM RT used by dicompyler

Python 152 69 Updated Jan 10, 2025

dicompyler Public Website

CSS 1 1 Updated Jul 8, 2016

Geant4 toolkit for the simulation of the passage of particles through matter - NIM A 506 (2003) 250-303

C++ 637 314 Updated Dec 17, 2024

The largest collection of PyTorch image encoders / backbones. Including train, eval, inference, export scripts, and pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (V…

Python 32,968 4,818 Updated Jan 22, 2025
HTML 13 4 Updated Oct 20, 2022

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

Python 93 29 Updated Dec 3, 2024
Python 6,208 1,821 Updated Jan 7, 2025

The code for the paper Improving CT Image Tumor Segmentation Through Deep Supervision and Attentional Gates.

Python 31 10 Updated Apr 19, 2021

『밑바닥부터 시작하는 딥러닝』(한빛미디어, 2017)

Python 1,214 1,193 Updated Jan 22, 2025
Jupyter Notebook 31 13 Updated Apr 1, 2024

This package contains deep learning models and related scripts for RoseTTAFold

Python 2,068 444 Updated Feb 15, 2024

Converting Pinnacle tar files to DICOM files

Python 24 15 Updated Dec 21, 2021
Jupyter Notebook 15 5 Updated Aug 2, 2022

BSMS205 Genetics

6 1 Updated Jun 9, 2021
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