Skip to content
View picodase's full-sized avatar
🎯
Focusing
🎯
Focusing
10 followers · 16 following
  • University of Washington, DiMaio lab
  • Seattle, WA
  • 07:07 (UTC -08:00)

Block or report picodase

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

  • enzymodel Public

    Effort to comprehensively model enzymatic function as observed in the literature

    Jupyter Notebook Updated Apr 2, 2023

  • PREFMoDeL Public

    A library of features describing single molecules (especially proteins)

    machine-learning proteins feature-engineering features biomolecule
    Python GNU General Public License v3.0 Updated Apr 2, 2023

  • picodase Public

    Config files for my GitHub profile.

    config github-config
    Updated Dec 25, 2022

  • picodase.github.io Public

    My project demonstration site

    JavaScript MIT License Updated Sep 27, 2022

  • xcompose Public

    Forked from kragen/xcompose

    for sharing .XCompose keybindings

    Emacs Lisp Updated Oct 9, 2021

  • bioicons Public

    Forked from duerrsimon/bioicons

    A library of free open source icons for science illustrations in biology and chemistry

    Vue 1 MIT License Updated Apr 24, 2021

  • mdanalysis Public

    Forked from MDAnalysis/mdanalysis

    MDAnalysis is a Python library to analyze molecular dynamics trajectories.

    Python 1 Other Updated Apr 4, 2021

  • mdsimple Public

    A command-line utility to easily create, setup, and submit a set of MD experiments to a job scheduler on a cluster. Initially supports GROMACS simulations and the PBS job scheduler.

    Shell 1 GNU General Public License v3.0 Updated Mar 28, 2021

  • dynafeature Public

    A library for featurizing protein dynamics data for molecular design.

    Jupyter Notebook Updated Feb 28, 2021

  • mlplayground Public

    Collection of prototype scripts for machine learning frameworks prior to a complete project repo idea formulation.

    Jupyter Notebook GNU General Public License v3.0 Updated Feb 26, 2021

  • dpgen Public

    Forked from deepmodeling/dpgen

    The deep potential generator

    Python GNU Lesser General Public License v3.0 Updated Feb 23, 2021

  • PlotNeuralNet Public

    Forked from HarisIqbal88/PlotNeuralNet

    Latex code for making neural networks diagrams

    TeX MIT License Updated Jan 29, 2021

  • cbpcode Public

    Jupyter Notebook Updated Jan 24, 2021

  • Pymol-script-repo Public

    Forked from Pymol-Scripts/Pymol-script-repo

    Collected scripts for Pymol

    Python Updated Dec 22, 2020

  • cs446_final Public

    Final project for Networks in Computational Biology at Oregon State University

    Jupyter Notebook Updated Dec 12, 2020

  • Dynamics Public

    Forked from makson96/Dynamics

    Dynamics PyMOL Plugin

    Python GNU General Public License v3.0 Updated Nov 1, 2020

  • avogadro Public

    Forked from cryos/avogadro

    Development of Avogadro 2 is being done at https://github.com/openchemistry/avogadrolibs. Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecu…

    C++ GNU General Public License v2.0 Updated Oct 6, 2020

  • spharmophore Public

    Structure-based pharmacophore and ligand family generator.

    Python Updated Jul 29, 2020

  • stsophore Public

    Transition-state feature-based enzyme scaffold family generator.

    Updated Jul 25, 2020

  • getcontacts Public

    Forked from getcontacts/getcontacts

    Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

    Python Apache License 2.0 Updated Jul 17, 2020

  • GROMACS_Examples Public

    Forked from cfinch/GROMACS_Examples

    Examples showing how to run GROMACS molecular dynamics simulations

    Shell Updated Jul 8, 2020

  • enlighten2-pymol Public

    Forked from vanderkamp/enlighten2-pymol

    PyMOL plugin for enlighten2

    Python GNU General Public License v3.0 Updated Jun 11, 2020

  • cs271-final-project Public

    Assembly Updated Mar 10, 2020

  • SORETTA Public

    Protein function prediction and protein unfolding package for computational protein design

    2 Updated Oct 23, 2019

  • RIP-MD Public

    Forked from DLab/RIP-MD
    HTML Updated Jun 26, 2018

  • PiViewer Public

    Forked from hugecadd/PiViewer

    PiViewer: an open-source tool for automated detection and display of pi-pi interactions

    Python MIT License Updated Jun 6, 2018

  • PyMine Public

    Forked from rrchaudhari/PyMine

    A PyMOL plugin to integrate and visualize data for drug discovery

    Python MIT License Updated May 2, 2017