polly-code
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nn_quantization Public
Learning about neural network quantization techniques.
Jupyter Notebook UpdatedOct 1, 2024 -
simple_icd_10_gm Public
Forked from StefanoTrv/simple_icd_10A simple python library for ICD-10-gm (german modification) codes
Python Creative Commons Zero v1.0 Universal UpdatedMar 9, 2024 -
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match_time_units_sim_exp Public
Match time units of simulations with the real time units (sec). We have the data from a cell line without additional CTCF site and cohesin.
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gen_init_conf_4_lammps Public
Generate initial conformation of a polymer chain for LAMMPS.
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mocca Public
Forked from HaasCP/moccaOpen-source Python project to analyze HPLC–DAD raw data.
Jupyter Notebook MIT License UpdatedSep 23, 2023 -
DPDchrom Public
Reconstruction of 3D conformation of chromatin fiber using single cell Hi-C data
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lammps_le Public
Loop extrusion module with LAMMPS
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speed_up_MSD Public
Here you can find a python script to reproduce all the plots from the medium article.
Python MIT License UpdatedSep 4, 2022 -
dynamic_seq Public
Playground to study possible collective properties of sequences depending on the rules.
Jupyter Notebook UpdatedMay 5, 2022 -
hmmlearn Public
Forked from zhanyinx/hmmlearnHidden Markov Models in Python, with scikit-learn like API
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 21, 2022 -
hic_Subtraction Public
Forked from yanyanzou0721/hic_SubtractionHic matrix subtraction
Python UpdatedSep 7, 2021 -
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lammpstrj_motion_correction Public
Subtract the translational and rotational movement of the polymer chain to study subdiffusion. It works quite bad for systems with less than 50 beads.
Python MIT License UpdatedJun 11, 2021 -
ICD_coding_Multi-Filter-Res-CNN Public
Forked from foxlf823/Multi-Filter-Residual-Convolutional-Neural-NetworkMulti-Filter Residual Convolutional Neural Network for Text Classification
Python UpdatedMar 31, 2021 -
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dstMatrixFromLmpFile Public
Short script to create distance matrix in dat fromat from lmp file (LAMMPS).
Python Apache License 2.0 UpdatedOct 4, 2019