Refactored RadioMediumObservable and added new Observable

Refactored RadioMediumObservable to RadioTransmissionObservable because of its function
Added correct RadioMediumObservable and updating in AbstractRadioMedium, DirectedGraphMedium and MRM
Added some documentation

tools/cooja/apps/mrm/java/org/contikios/mrm/AreaViewer.java

@@ -230,7 +230,7 @@ public AreaViewer(Simulation simulationToVisualize, Cooja gui) {
     // We want to listen to changes both in the channel model as well as in the radio medium
     currentChannelModel.addSettingsObserver(channelModelSettingsObserver);
     currentRadioMedium.addSettingsObserver(radioMediumSettingsObserver);
-    currentRadioMedium.addRadioMediumObserver(radioMediumActivityObserver);
+    currentRadioMedium.addRadioTransmissionObserver(radioMediumActivityObserver);
 
     // Set initial size etc.
     setSize(500, 500);
@@ -2344,7 +2344,7 @@ public void closePlugin() {
     }
 
     if (currentRadioMedium != null && radioMediumActivityObserver != null) {
-      currentRadioMedium.deleteRadioMediumObserver(radioMediumActivityObserver);
+      currentRadioMedium.deleteRadioTransmissionObserver(radioMediumActivityObserver);
     } else {
       logger.fatal("Could not remove observer: " + radioMediumActivityObserver);
     }

tools/cooja/apps/mrm/java/org/contikios/mrm/MRM.java

@@ -143,13 +143,19 @@ public void noiseLevelChanged(NoiseSourceRadio radio, int signal) {
   public void registerRadioInterface(Radio radio, Simulation sim) {
         super.registerRadioInterface(radio, sim);
 
+        /* Radio Medium changed here so notify Observers */
+        radioMediumObservable.setChangedAndNotify();
+
         if (WITH_NOISE && radio instanceof NoiseSourceRadio) {
                 ((NoiseSourceRadio)radio).addNoiseLevelListener(noiseListener);
         }
   }
   public void unregisterRadioInterface(Radio radio, Simulation sim) {
         super.unregisterRadioInterface(radio, sim);
 
+        /* Radio Medium changed here so notify Observers */
+        radioMediumObservable.setChangedAndNotify();
+
         if (WITH_NOISE && radio instanceof NoiseSourceRadio) {
                 ((NoiseSourceRadio)radio).removeNoiseLevelListener(noiseListener);
         }

tools/cooja/java/org/contikios/cooja/RadioMedium.java

@@ -100,24 +100,24 @@ public abstract class RadioMedium {
    * Adds an observer which is notified each time a radio connection has finished.
    *
    * @see #getLastConnection()
-   * @see #deleteRadioMediumObserver(Observer)
+   * @see #deleteRadioTransmissionObserver(Observer)
    * @param observer New observer
    */
-  public abstract void addRadioMediumObserver(Observer observer);
+  public abstract void addRadioTransmissionObserver(Observer observer);
 
   /**
    * @return Radio medium observable
    */
-  public abstract Observable getRadioMediumObservable();
+  public abstract Observable getRadioTransmissionObservable();
 
   /**
    * Deletes an radio medium observer.
    *
-   * @see #addRadioMediumObserver(Observer)
+   * @see #addRadioTransmissionObserver(Observer)
    * @param observer
    *          Observer to delete
    */
-  public abstract void deleteRadioMediumObserver(Observer observer);
+  public abstract void deleteRadioTransmissionObserver(Observer observer);
 
   /**
    * @return Last radio connection finished in the radio medium

tools/cooja/java/org/contikios/cooja/plugins/DGRMConfigurator.java

@@ -111,7 +111,7 @@ public DGRMConfigurator(Simulation sim, Cooja gui) {
     radioMedium = (DirectedGraphMedium) sim.getRadioMedium();
 
     /* Listen for graph updates */
-    radioMedium.addRadioMediumObserver(radioMediumObserver = new Observer() {
+    radioMedium.addRadioTransmissionObserver(radioMediumObserver = new Observer() {
       public void update(Observable obs, Object obj) {
         model.fireTableDataChanged();
       }
@@ -500,7 +500,7 @@ public Class<? extends Object> getColumnClass(int c) {
   };
 
   public void closePlugin() {
-    radioMedium.deleteRadioMediumObserver(radioMediumObserver);
+    radioMedium.deleteRadioTransmissionObserver(radioMediumObserver);
   }
 
 }

tools/cooja/java/org/contikios/cooja/plugins/EventListener.java

@@ -223,7 +223,7 @@ public EventListener(Simulation simulationToControl, Cooja gui) {
 
     JCheckBox radioMediumCheckBox = new JCheckBox("Radio medium event", false);
     radioMediumCheckBox.putClientProperty("observable", mySimulation
-        .getRadioMedium().getRadioMediumObservable());
+        .getRadioMedium().getRadioTransmissionObservable());
     radioMediumCheckBox.addActionListener(generalCheckBoxListener);
     generalPanel.add(radioMediumCheckBox);
 

tools/cooja/java/org/contikios/cooja/plugins/RadioLogger.java

@@ -509,7 +509,7 @@ public void keyPressed(KeyEvent e) {
     adjuster.setDynamicAdjustment(true);
     adjuster.packColumns();
 
-    radioMedium.addRadioMediumObserver(radioMediumObserver = new Observer() {
+    radioMedium.addRadioTransmissionObserver(radioMediumObserver = new Observer() {
       @Override
       public void update(Observable obs, Object obj) {
         RadioConnection conn = radioMedium.getLastConnection();
@@ -784,7 +784,7 @@ private void prepareTooltipString(RadioConnectionLog conn) {
   @Override
   public void closePlugin() {
     if (radioMediumObserver != null) {
-      radioMedium.deleteRadioMediumObserver(radioMediumObserver);
+      radioMedium.deleteRadioTransmissionObserver(radioMediumObserver);
     }
   }
 

tools/cooja/java/org/contikios/cooja/plugins/skins/TrafficVisualizerSkin.java

@@ -130,7 +130,7 @@ public void run() {
         historyList.clear();
 
         /* Start observing radio medium for transmissions */
-        radioMedium.addRadioMediumObserver(radioMediumObserver);
+        radioMedium.addRadioTransmissionObserver(radioMediumObserver);
 
         /* Fade away arrows */
         simulation.scheduleEvent(ageArrowsTimeEvent, simulation.getSimulationTime() + 100*Simulation.MILLISECOND);
@@ -147,7 +147,7 @@ public void setInactive() {
     }
 
     /* Stop observing radio medium */
-    radioMedium.deleteRadioMediumObserver(radioMediumObserver);
+    radioMedium.deleteRadioTransmissionObserver(radioMediumObserver);
   }
 
   @Override

tools/cooja/java/org/contikios/cooja/radiomediums/AbstractRadioMedium.java

@@ -92,7 +92,13 @@ public abstract class AbstractRadioMedium extends RadioMedium {
 	public int COUNTER_RX = 0;
 	public int COUNTER_INTERFERED = 0;
 
+	/**
+	 * Two Observables to observe the radioMedium and radioTransmissions
+	 * @see addRadioTransmissionObserver
+	 * @see addRadioMediumObserver
+	 */
 	protected ScnObservable radioMediumObservable = new ScnObservable();
+	protected ScnObservable radioTransmissionObservable = new ScnObservable();
 
 	/**
 	 * This constructor should always be called from implemented radio mediums.
@@ -280,7 +286,7 @@ public void execute(long t) {
 
 					/* Notify observers */
 					lastConnection = null;
-					radioMediumObservable.setChangedAndNotify();
+					radioTransmissionObservable.setChangedAndNotify();
 				}
 				break;
 				case TRANSMISSION_FINISHED: {
@@ -325,7 +331,7 @@ public void execute(long t) {
 					updateSignalStrengths();
 
 					/* Notify observers */
-					radioMediumObservable.setChangedAndNotify();
+					radioTransmissionObservable.setChangedAndNotify();
 				}
 				break;
 				case CUSTOM_DATA_TRANSMITTED: {
@@ -340,7 +346,7 @@ public void execute(long t) {
 					/* Custom data object */
 					Object data = ((CustomDataRadio) radio).getLastCustomDataTransmitted();
 					if (data == null) {
-						logger.fatal("No custom data object to forward");
+						logger.fatal("No custom data objecTransmissiont to forward");
 						return;
 					}
 
@@ -438,6 +444,7 @@ public void registerRadioInterface(Radio radio, Simulation sim) {
 
 		registeredRadios.add(radio);
 		radio.addObserver(radioEventsObserver);
+		radioMediumObservable.setChangedAndNotify();
 
 		/* Update signal strengths */
 		updateSignalStrengths();
@@ -454,6 +461,8 @@ public void unregisterRadioInterface(Radio radio, Simulation sim) {
 
 		removeFromActiveConnections(radio);
 
+		radioMediumObservable.setChangedAndNotify();
+
 		/* Update signal strengths */
 		updateSignalStrengths();
 	}
@@ -520,10 +529,40 @@ public void setSendRssi(Radio radio, double rssi) {
 		sendRssi.put(radio, rssi);
 	}
 
+	/**
+	 * Register an observer that gets notified when the radiotransmissions changed.
+	 * E.g. creating new connections.
+	 * This does not include changes in the settings and (de-)registration of radios.
+	 * @see addRadioMediumObserver
+	 * @param observer the Observer to register
+	 */
+	public void addRadioTransmissionObserver(Observer observer) {
+		radioTransmissionObservable.addObserver(observer);
+	}
+
+	public Observable getRadioTransmissionObservable() {
+		return radioTransmissionObservable;
+	}
+
+	public void deleteRadioTransmissionObserver(Observer observer) {
+		radioTransmissionObservable.deleteObserver(observer);
+	}
+
+	/**
+	 * Register an observer that gets notified when the radio medium changed.
+	 * This includes changes in the settings and (de-)registration of radios. 
+	 * This does not include transmissions, etc as these are part of the radio
+	 * and not the radio medium itself.
+	 * @see addRadioTransmissionObserver
+	 * @param observer the Observer to register
+	 */
 	public void addRadioMediumObserver(Observer observer) {
 		radioMediumObservable.addObserver(observer);
 	}
 
+	/**
+	 * @return the radioMediumObservable
+	 */
 	public Observable getRadioMediumObservable() {
 		return radioMediumObservable;
 	}

tools/cooja/java/org/contikios/cooja/radiomediums/DirectedGraphMedium.java

@@ -93,7 +93,7 @@ public void addEdge(Edge e) {
     edges.add(e);
     requestEdgeAnalysis();
 
-    radioMediumObservable.setChangedAndNotify();
+    radioTransmissionObservable.setChangedAndNotify();
   }
 
   public void removeEdge(Edge edge) {
@@ -104,14 +104,15 @@ public void removeEdge(Edge edge) {
     edges.remove(edge);
     requestEdgeAnalysis();
 
-    radioMediumObservable.setChangedAndNotify();
+
+    radioTransmissionObservable.setChangedAndNotify();
   }
 
   public void clearEdges() {
     edges.clear();
     requestEdgeAnalysis();
 
-    radioMediumObservable.setChangedAndNotify();
+    radioTransmissionObservable.setChangedAndNotify();
   }
 
   public Edge[] getEdges() {
@@ -221,6 +222,9 @@ protected void analyzeEdges() {
 
     this.edgesTable = arrTable;
     edgesDirty = false;
+
+    /* Radio Medium changed here so notify Observers */
+    radioMediumObservable.setChangedAndNotify();
   }
 
   /**