psytky03
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Picker for markdown-based citations and lightweight reference manager for BibTeX libraries.
A plugin for Obsidian that helps you write and edit novels, screenplays, and other long projects.
A simple Zotero translator that creates a Markdown Link when exporting
An R script to generate plots for ADMIXTURE runs, for multiple K values.
Some functions to facilitate plotting the output of PLINK in R.
Tutorial for visualising admixture on a map
A data clustering package based on admixture ratios (Q matrix) of population structure analysis.
Fast and accurate gene fusion detection from RNA-Seq data
R script that performs gene-set or gene property analysis using TWAS results.
Make Zotero effective for us LaTeX holdouts
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
A Python package for exploring and analysing genetic variation data
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
CNV detection tool for targeted NGS panel data
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Rmd source files for the HarvardX series PH525x
Genetic maps interpolated to sites in the 1000 Genomes project
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
List of gene lists for genomic analyses.