Convert Seurat objects to 10x Genomics Loupe files.

A package containing useful functions for extending the Seurat (https://satijalab.org/seurat/) package for single cell RNA-Seq analysis

A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics

Haplotype-aware CNV analysis from single-cell RNA-seq

Nextflow workflow to process WGS data

Copy number variant detection from targeted DNA sequencing

An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.

A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas

Tool for plotting sequencing data along genomic coordinates.

Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R

Comprehensive pipeline for donor demultiplexing in single cell

R package AtaCNV

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data