Manage Files Across Sessions

Positron, a next-generation data science IDE

Cross-disease comparison of case-control gut microbiome studies

List of software packages for multi-omics analysis

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

GNOLL is an efficient dice notation parser for multiple programming languages that supports a wide set of dice notation

A lightweight command line tool for calculating poker hand probabilities

⚡ A Fast, Extensible Progress Bar for Python and CLI

Vanilla regression methods for microbiome differential abundance analysis

SRA Tools

RNA-seq aligner

Continuous administration of the Greene Lab's electronic scrum

Differential expression of RNA-seq data using the Negative Binomial

Word-guessing game

VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.

Official s3cmd repo -- Command line tool for managing S3 compatible storage services (including Amazon S3 and CloudFront).

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Accurate sample inference from amplicon data with single nucleotide resolution

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

~anonymous text blasts and hotlines over signal

The second version of the Kraken taxonomic sequence classification system

Interactive fiction (text adventure) and Mud framework

Source for https://transpose-publishing.github.io (TRANsparency in Scholarly Publishing for Open Scholarship Evolution)

A fast and sensitive gapped read aligner

A prettier index.html for listing public files and folders in Amazon S3 buckets. (UNMAINTAINED)

A Flask extension to support the Gopher protocol

Concise, consistent, and legible badges in SVG and raster format