Data camp M2DS: single-cell type classification challenge

Starting kit for the scMARK_classification challenge: classification of cell-types with single-cell RNAseq count data.

Setup

Run the following command in your prefered local repository

git clone [email protected]:ramp-kits/scMARK_classification.git

Download OSF data

You can download the public data via the dedicated python script to be called as follow

python download_data.py 

Get started with the challenge

Open the jupyter notebook scMARK_classification_starting_kit.ipynb and follow the guide !