Name		Name	Last commit message	Last commit date
Latest commit History 180 Commits
spoligotyping-wgs		spoligotyping-wgs
.dockerignore		.dockerignore
.gitattributes		.gitattributes
.gitignore		.gitignore
ERR552797_cdc_interpretation.tsv		ERR552797_cdc_interpretation.tsv
In_silico_simulated_TB_mutations_081423_ms.xlsx		In_silico_simulated_TB_mutations_081423_ms.xlsx
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
add_drug_annotation.py		add_drug_annotation.py
bed_from_genbank.py		bed_from_genbank.py
change_chromosome_name_in_vcf.py		change_chromosome_name_in_vcf.py
create_variant_summary.py		create_variant_summary.py
create_variant_summary.sh		create_variant_summary.sh
depth_of_coverage.py		depth_of_coverage.py
diff_json_files.py		diff_json_files.py
freebayes.py		freebayes.py
gene_from_genbank.py		gene_from_genbank.py
getinsertsize.py		getinsertsize.py
json_to_tsv.py		json_to_tsv.py
make_jsons.py		make_jsons.py
make_kraken2_db.sh		make_kraken2_db.sh
merge_bcftools_SnpSift.py		merge_bcftools_SnpSift.py
mutate_fasta.py		mutate_fasta.py
parse_annotation.py		parse_annotation.py
parse_annotation_v2.py		parse_annotation_v2.py
parse_vcf.py		parse_vcf.py
run_centrifuge.sh		run_centrifuge.sh
run_depth_of_coverage.sh		run_depth_of_coverage.sh
run_kraken2.sh		run_kraken2.sh
run_tbdb_json_to_tsv.sh		run_tbdb_json_to_tsv.sh
tbdb_json_to_tsv.py		tbdb_json_to_tsv.py
test_add_drug_annotation.sh		test_add_drug_annotation.sh
test_variant_interpretation.sh		test_variant_interpretation.sh
test_vcf_to_dataframe.sh		test_vcf_to_dataframe.sh
tstv.sh		tstv.sh
variant_interpretation_intersection.py		variant_interpretation_intersection.py
variant_positions_distribution.py		variant_positions_distribution.py
vcf_filter_range.py		vcf_filter_range.py
wdlviz.py		wdlviz.py

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