Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
rasools authored Mar 2, 2018
1 parent f819fe6 commit b2091cc
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ To test this toolbox and generate a protein-specific genome-scale model you just
3) Protein-Specific Information Matrix (there is a list of human proteins in excel format in "inputs" folder named PSIM_HUMAN.xlsx). You can call this list using importPsimFromExcel.m function and then use output of this function in humanSec.m function.
4) List of template reactions (there is a list of template reactions in excel format in "inputs" folder named tempRxns_v01.xlsx). You can call this list using importTempRxnsFromExcel.m function and then use output of this function in humanSec.m function.

After generating secModel maybe it can not produce your interested protein, in this case you can use secModelGapFilling function. This function will use a reference model to add reactions which could be used to gap fill secModel for protein production. This function will define a task for produntion of interested protein and use refrence model to satisfy the task.
After generating secModel maybe it can not produce your interested protein, in this case you can use secModelGapFilling function. This function will use a reference model to add reactions which could be used to gap fill secModel for protein production. This function will define a task for production of interested protein and use refrence model to satisfy the task.

0 comments on commit b2091cc

Please sign in to comment.