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Changes by M Longo (rv255) (plus bug fixes)
1. New radiation scheme, based on the multiple layer, multiple-scattering model
by Zhao and Qualls (2005;2006). It has the finite crown area for diffuse radiation,
and I ran it in the past and it works fine, but I haven't tested extensively, and
should not be used in default runs.
2. Added the cosine interpolation for radiation for when the radiation from the met
driver is not to be linearly interpolated. This avoids crashes with this non-standard
option.
3. Added some new variables to the namelist, to help tuning:
a. Leaf transmittance and reflectance, leaf mean orientation and clumping factor
b. Kw for grasses and trees
c. D0 (transpiration factor)
d. Vm factor was split between C3 and C4
e. Some of the other parameters became absolute values and were split between
C3/C4 or tree/grass
f. Klow for CO2-limited photosynthesis (C4 grass only)
g. Leaf width (grass/broadleaf/conifer)
4. Several bug fixes, including a couple on the surface layer model (a bogus von Karman
constant in the definition of zeta), and a variable that wasn't properly copied
(soil resistance). The latter didn't change results for the default method, but it
made the ground vapour methods to work.
5. Added a CLM based surface layer model, although I think there is no real benefit so
I am going to keep using Beljaars and Holtslag because the functional form is smoother.
6. Changed IALLOM, mainly to remove some options we didn't use, and added a new option.
These are the new settings. Except for the rooting depth and maximum crown area, the
options affect tropical trees and grasses only:
0 -- Original ED-2.1;
1 -- a. The coefficients for structural biomass are set so the total AGB
is similar to Baker et al. (2004), equation 2. Balive is the default ED-2.1;
b. Experimental root depth that makes canopy trees to have root depths of 5m
and grasses/seedlings at 0.5 to have root depth of 0.5 m.
c. Crown area defined as in Poorter et al. (2006), imposing maximum crown area.
2 -- Similar to 1, but with a few extra changes:
a. Height -> DBH allometry as in Poorter et al. (2006), this makes the trees
to hit 35 m at a somewhat higher DBH, so Bleaf still increases up to ~90 cm.
b. Balive is retuned, using a few leaf biomass allometric equations for
a few genuses in Costa Rica. References:
Cole and Ewel (2006), and Calvo Alvarado et al. (2008).
7. I added a correction to the wind in the surface layer for the unstable case, so it
accounts for additional turbulence when estimating the winds for each cohort
8. Added a temporary CLM-4 canopy resistance. This is ugly, overly simplified, but it
seems to give the best results for water fluxes...
9. Added soil color as a new variable, which hopefully will let us to tune ground albedo.
Soil colors 1-20 are based on CLM-4, and 21 is the default from ED.
10. Above ground biomass fraction is a PFT-dependent variable. There is no practical
change except that loss_fraction disappeared and was substituted by agf_bs. The
values are the currently the same for all PFTs.
11. Changed the light phenology so it has values that are closer to the current tuning.
Changed the call for the top cohort, so it uses properties from a cohort with the
same properties. None of these changes helped, results are still bad, though.
12. Changed (simplified) the branch thermodynamics options:
a. I deleted some allometric options that were either non-functional, or not
tested. Now we only have one DBH => WAI allometry.
b. IBRANCH_THERMO has 3 options now:
0 -- No branches
1 -- Leaves and branches are solved together in RK4 (veg_energy and veg_water
are the prognostic variables). I'm not a huge fan of this, but it works,
and Paul and Steve supported this option.
2 -- Leaves and branches are solved as independent entities in RK4
(leaf_energy, leaf_water, wood_energy, wood_water are the prognostic
variables). I like this better but it is a lot slower than 0 and 1.
13. Changed the fire model so it uses the monthly mean moisture rather than the
instantaneous one, so rainfall on the 31st day of the month will not suppress fires
if the month was very dry.
14. Added some diagnostic variables, and removed NEE as it was not NEE but carbon dioxide
flux. We now track CO2 flux and storage, their monthly means and mean diurnal cycle
as variables on their own. Since these variables are usually compared to tower, they
were kept in umol/m2/s, not kgC/m2/yr...
15. Changed the critical height for reproduction for grasses, now it uses DBH (temporary
fix until new grasses are implemented), which avoids the plants to stop growing just
because of round-off errors.
16. When we sort cohorts, we use height as the primary variable, but in case of ties, we
make the use DBH to break the tie. Not sure if this is going to be a problem when
dealing with new grasses, but I think we should do that for trees.
17. Renamed the variable max_dbh to dbh_crit because it did not represent the maximum
DBH, just a DBH when the cohort hits its maximum possible height.
18. Change to water limitation: New option to H2O_PLANT_LIM where available water is
the soil water at field capacity minus wilting point, scaled by the so-called
wilting factor: (psi(k) - (H - z(k)) - psi_wp) / (psi_fc - psi_wp)
where psi is the matric potentital at layer k, z is the layer depth, H it the
crown height and psi_fc and psi_wp are the matric potentials at wilting point
and field capacity.
19. Several bug fixes in the coupled model, and a couple of changes in Ramspost. They
are both working at least for my runs...- Loading branch information
