See the PECAn wiki, especially the development page, for details
http://128.174.125.122/wiki/index.php/PECAn_Documentation:Development


## directories
all instructions assume that you are in the PECANHOME directory on ebi-forecast
PECAn home directory
    PECANHOME=/home/$USER/pecan
PECAn out directory: this is where PECAn output goes
    PECANOUT=$PECANHOME/out

## Step 1: initialize pecan


## build the pecan R library
    ./bash/pecanbuild.sh

note: if you get library errors when installing PECAn, remove libraries in ~/lib/R mentioned in the error

## add the folders /home/scratch/$USER/pecan and /home/scratch/$USER/pecan/out to ebi-cluster


##### Running Kepler (from $PECANHOME)
1. meta-analysis and ed run
      kepler -runkar kepler/pecan.kar
2. post-analysis 
      kepler -runkar kepler/pecan.kar


##### Useful Bash Scripts
to return a list of ed runs that end in error:
ssh -T ebi-cluster < ./bash/find_edout_errors.sh

#####Place in bash alias
alias kepler='/usr/local/Kepler-2.0/kepler.sh'