Combined processed data files and Rscripts for oysters collected from all sites in Narragansett Bay.

Code written by Rebecca Stevick, URI-GSO (contact: rjstevick (at) gmail.com)

This repository contains the pre-processed sequencing data and the Rscripts to reproduce the figures in the final chapter of my dissertation. All data used has been previously published/analyzed in other chapters. This repo is mainly to save the R analysis and figure commands.

To cite this work:

Stevick, R. J. (2019). Oyster-Associated Microbial Community Dynamics (Doctoral dissertation, University of Rhode Island). https://digitalcommons.uri.edu/oa_diss/1089/

Map of dissertation study area with experimental sites highlighted:

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Contents

All adult wild oyster gut samples from 7 sites

1. Processed data file at Order level: TNC_PJ_V6_Orderdata_edit.xlsx
2. Processed data file at Phyla level: TNC_PJ_V6_Phyladata_edit.xlsx
3. Rscript to analyze and produce figures: AllNBay_TNC_PJ_16S_analysis_FigureV2toV5.R

All oyster samples from dissertation, including larval

1. Processed data file at Phyla level: RWU_TNC_PJ_16S_Phyladata.xlsx
2. Rscript to analyze and produce figures: Conclusions_RWU_TNC_PJ_16S_analysis_FiguresV6toV8.R