gen_crates.py: extract workflow release tag [no ci]

rlibouba · Jun 17, 2021 · f1163a4 · f1163a4
1 parent 56191ba
commit f1163a4
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Showing 7 changed files with 19 additions and 12 deletions.
diff --git a/workflows/gen_crates.py b/workflows/gen_crates.py
@@ -79,6 +79,7 @@ def process_repo(repo_dir_entry):
     workflow = crate.add_workflow(wf_source, wf_id, main=True,
                                   lang="galaxy", gen_cwl=False)
     workflow["name"] = code["name"]
+    workflow["version"] = code["release"]
     crate.root_dataset["author"] = author
     wf_url = f"https://github.com/iwc-workflows/{repo_dir_entry.name}"
     workflow["url"] = crate.root_dataset["isBasedOn"] = wf_url

diff --git a/...ows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation/ro-crate-metadata.json b/...ows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation/ro-crate-metadata.json
@@ -22,7 +22,7 @@
             "@id": "./",
             "@type": "Dataset",
             "author": "Wolfgang Maier",
-            "datePublished": "2021-06-14T17:44:52.016833",
+            "datePublished": "2021-06-17T15:55:52.542771",
             "hasPart": [
                 {
                     "@id": "consensus-from-variation.ga"
@@ -66,7 +66,8 @@
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
-            "url": "https://github.com/iwc-workflows/sars-cov-2-consensus-from-variation"
+            "url": "https://github.com/iwc-workflows/sars-cov-2-consensus-from-variation",
+            "version": "0.2"
         },
         {
             "@id": "#galaxy",

diff --git a/...ws/sars-cov-2-variant-calling/sars-cov-2-ont-artic-variant-calling/ro-crate-metadata.json b/...ws/sars-cov-2-variant-calling/sars-cov-2-ont-artic-variant-calling/ro-crate-metadata.json
@@ -22,7 +22,7 @@
             "@id": "./",
             "@type": "Dataset",
             "author": "Wolfgang Maier",
-            "datePublished": "2021-06-14T17:44:52.013342",
+            "datePublished": "2021-06-17T15:55:52.540056",
             "hasPart": [
                 {
                     "@id": "ont-artic-variation.ga"
@@ -66,7 +66,8 @@
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
-            "url": "https://github.com/iwc-workflows/sars-cov-2-ont-artic-variant-calling"
+            "url": "https://github.com/iwc-workflows/sars-cov-2-ont-artic-variant-calling",
+            "version": "0.2"
         },
         {
             "@id": "#galaxy",

diff --git a/...cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling/ro-crate-metadata.json b/...cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling/ro-crate-metadata.json
@@ -22,7 +22,7 @@
             "@id": "./",
             "@type": "Dataset",
             "author": "Wolfgang Maier",
-            "datePublished": "2021-06-14T17:44:52.014933",
+            "datePublished": "2021-06-17T15:55:52.541338",
             "hasPart": [
                 {
                     "@id": "pe-artic-variation.ga"
@@ -66,7 +66,8 @@
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
-            "url": "https://github.com/iwc-workflows/sars-cov-2-pe-illumina-artic-variant-calling"
+            "url": "https://github.com/iwc-workflows/sars-cov-2-pe-illumina-artic-variant-calling",
+            "version": "0.3"
         },
         {
             "@id": "#galaxy",

diff --git a/...s-cov-2-variant-calling/sars-cov-2-pe-illumina-wgs-variant-calling/ro-crate-metadata.json b/...s-cov-2-variant-calling/sars-cov-2-pe-illumina-wgs-variant-calling/ro-crate-metadata.json
@@ -22,7 +22,7 @@
             "@id": "./",
             "@type": "Dataset",
             "author": "Wolfgang Maier",
-            "datePublished": "2021-06-14T17:44:52.018646",
+            "datePublished": "2021-06-17T15:55:52.544159",
             "hasPart": [
                 {
                     "@id": "pe-wgs-variation.ga"
@@ -66,7 +66,8 @@
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
-            "url": "https://github.com/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling"
+            "url": "https://github.com/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling",
+            "version": "0.1"
         },
         {
             "@id": "#galaxy",

diff --git a/...s-cov-2-variant-calling/sars-cov-2-se-illumina-wgs-variant-calling/ro-crate-metadata.json b/...s-cov-2-variant-calling/sars-cov-2-se-illumina-wgs-variant-calling/ro-crate-metadata.json
@@ -22,7 +22,7 @@
             "@id": "./",
             "@type": "Dataset",
             "author": "Wolfgang Maier",
-            "datePublished": "2021-06-14T17:44:52.011918",
+            "datePublished": "2021-06-17T15:55:52.538877",
             "hasPart": [
                 {
                     "@id": "se-wgs-variation.ga"
@@ -66,7 +66,8 @@
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
-            "url": "https://github.com/iwc-workflows/sars-cov-2-se-illumina-wgs-variant-calling"
+            "url": "https://github.com/iwc-workflows/sars-cov-2-se-illumina-wgs-variant-calling",
+            "version": "0.1"
         },
         {
             "@id": "#galaxy",

diff --git a/workflows/sars-cov-2-variant-calling/sars-cov-2-variation-reporting/ro-crate-metadata.json b/workflows/sars-cov-2-variant-calling/sars-cov-2-variation-reporting/ro-crate-metadata.json
@@ -22,7 +22,7 @@
             "@id": "./",
             "@type": "Dataset",
             "author": "Wolfgang Maier",
-            "datePublished": "2021-06-14T17:44:52.009715",
+            "datePublished": "2021-06-17T15:55:52.536990",
             "hasPart": [
                 {
                     "@id": "variation-reporting.ga"
@@ -66,7 +66,8 @@
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
-            "url": "https://github.com/iwc-workflows/sars-cov-2-variation-reporting"
+            "url": "https://github.com/iwc-workflows/sars-cov-2-variation-reporting",
+            "version": "0.1"
         },
         {
             "@id": "#galaxy",