Apply "group by" menu option to selected alignment track only, not al…

…l alignment tracks. Fixes igvteam#1045

Update README

Enable port by default

Disable "feature jumping" from annotation tracks when typing gene nam…

…e in search text field. Otherwise, genes containing "f" or "r" will cause an unwanted feature jump.

Account for data range thresholding when coloring coverage tracks by …

…allele fractions -- fixes igvteam#1100

bug fix -- cytoband "red box" does not move. Fixes igvteam#1096

Excluding Log4J from dependencies packaged into the bundles

Previous commit did not get this right...

temp removal of circview contents

prefs update

Updated to Log4J 2.16.0 libraries

This is to address the Log4Shell bug.