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Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Starstruckx3Achievement: Pull Sharkx3

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  • compute-gpu-installation Public

    Forked from GoogleCloudPlatform/compute-gpu-installation
    Python Apache License 2.0 Updated Aug 22, 2022

  • citar Public

    Forked from emacs-citar/citar

    Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.

    Emacs Lisp GNU General Public License v3.0 Updated Apr 23, 2022

  • gffutils Public

    Forked from daler/gffutils

    GFF and GTF file manipulation and interconversion

    Python MIT License Updated Jan 25, 2022

  • simdna Public

    Forked from kundajelab/simdna

    A python library for creating simulated regulatory DNA sequences

    Python MIT License Updated Dec 15, 2021

  • AoC2021 Public

    Python Updated Dec 3, 2021

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 1 Updated Jul 26, 2021

  • ldc-feedstock Public

    Forked from conda-forge/ldc-feedstock

    A conda-smithy repository for ldc.

    Shell BSD 3-Clause "New" or "Revised" License Updated Jul 22, 2021

  • dvc.org Public

    Forked from iterative/dvc.org

    🔗 DVC website and documentation

    TypeScript Apache License 2.0 Updated May 19, 2021

  • smrnaseq Public

    Forked from nf-core/smrnaseq

    A small-RNA sequencing analysis pipeline

    Nextflow MIT License Updated Mar 8, 2021

  • MultiQC Public

    Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python 2 GNU General Public License v3.0 Updated Mar 4, 2021

  • MPRAflow Public

    Forked from shendurelab/MPRAflow

    A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

    Python Apache License 2.0 Updated Feb 16, 2021

  • MultiQC_bcbio Public

    Forked from MultiQC/MultiQC_bcbio

    MultiQC plugin for bcbio_nextgen pipeline

    Python MIT License Updated Oct 29, 2020

  • CrossMap Public

    Forked from liguowang/CrossMap

    CrossMap is a python program to lift over genome coordinates from one genome version to another.

    Python Other Updated Oct 27, 2020

  • Delicious Public

    Source code to Delicious bookmarking site, pull requests welcome

    Python 17 3 Updated Oct 1, 2020

  • octopus Public

    Forked from luntergroup/octopus

    Bayesian haplotype-based mutation calling

    C++ MIT License Updated Sep 16, 2020

  • chainfiles Public

    Chain files for use with liftOver and CrossMap

    Updated Jul 29, 2020

  • ipython-cluster-helper Public

    Tool to easily start up an IPython cluster on different schedulers.

    Python 147 23 Updated May 1, 2020

  • chipseq-greylist Public

    Python implementation of the GreyListChIP Bioconductor package

    Python 3 MIT License Updated Apr 27, 2020

  • bik-manipulation Public

    Training set of manipulated images from open access publications identified by Elisabeth Bik

    1 1 Updated Feb 15, 2020

  • VEnCode Public

    Forked from AndreMacedo88/VEnCode
    Python Other Updated Feb 4, 2020

  • tiny-test-data Public

    Super small biological datasets for unit testing

    Python 60 28 MIT License Updated Nov 6, 2019

  • duphold Public

    Forked from brentp/duphold

    don't get DUP'ed or DEL'ed by your putative SVs.

    Nim MIT License Updated Oct 24, 2019

  • mastermind Public

    Find minimal colorings for immunostaining multiple celltypes simultaneously

    Python Updated Oct 10, 2019

  • readxl Public

    Forked from tidyverse/readxl

    Read excel files (.xls and .xlsx) into R 🖇

    C++ Other Updated Oct 9, 2019

  • r-readxl-feedstock Public

    Forked from conda-forge/r-readxl-feedstock

    A conda-smithy repository for r-readxl.

    Shell BSD 3-Clause "New" or "Revised" License Updated Oct 9, 2019

  • bcbio_validations Public

    Forked from bcbio/bcbio_validations

    Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

    HTML Updated Sep 25, 2019

  • bcbio_docker Public

    Forked from bcbio/bcbio_docker

    Automated Docker builds for bcbio

    Python MIT License Updated Sep 3, 2019

  • brushback Public

    Does brushing back a batter help a pitcher on subsequent pitches to the outside of the plate?

    Updated Aug 10, 2019

  • pybedtools Public

    Forked from daler/pybedtools

    Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

    Python Other Updated Aug 2, 2019

  • TitanCNA Public

    Forked from gavinha/TitanCNA

    Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

    R GNU General Public License v3.0 Updated Jul 10, 2019