update load script

rpartridge · Jul 29, 2016 · e21623a · e21623a
1 parent 34708bd
commit e21623a
Showing 1 changed file with 32 additions and 32 deletions.
diff --git a/src/main/webapp/resources/js/pv/load.js b/src/main/webapp/resources/js/pv/load.js
@@ -1,42 +1,42 @@
 
 (function() {
 
-        if(document.getElementById('data-pdb') != null) {
-            var pdbid = window.frameElement.getAttribute('data-pdb');
-        } 
-        else {
-            var pdbid = "5ddk";
-        }
+        // if(document.getElementById('data-pdb') != null) {
+        //     var pdbid = window.frameElement.getAttribute('data-pdb');
+        // } 
+        // else {
+        //     var pdbid = "5ddk";
+        // }
 
         // usually just use this
         //var pdbid = window.frameElement.getAttribute('data-pdb');
 
-        var folder = pdbid.charAt(1).concat(pdbid.charAt(2));
-        var url = 'pdb/' + folder + '/pdb' + pdbid + '.ent.gz';
+        // var folder = pdbid.charAt(1).concat(pdbid.charAt(2));
+        // var url = 'pdb/' + folder + '/pdb' + pdbid + '.ent.gz';
 
         // var element = document.getElementById('gl');
         // var viewer = pv.Viewer(element, 
         //                     { quality : 'high', width: 'auto', height : 'auto',
         //                       antialias : true, outline : true});
-        var options = {
-                width: 50,
-                height: 50,
-                antialias: true,
-                quality : 'medium'
-        };
-        proteinViewer = pv.Viewer(document.getElementById('viewer'), options);
+        // var options = {
+        //         width: 50,
+        //         height: 50,
+        //         antialias: true,
+        //         quality : 'medium'
+        // };
+        // proteinViewer = pv.Viewer(document.getElementById('viewer'), options);
         console.log("script entered");
 
-        function load(pdbid) {
-            console.log("load funct entered");
-            //document.getElementById('status').innerHTML ='loading ' + pdbid;
-            pv.io.fetchPdb(url, function(structure) {
-              window.structure = structure;
-              preset();
-              proteinViewer.centerOn(structure);
-            });
-            document.getElementById('status').innerHTML = '';
-        }
+        // function load(pdbid) {
+        //     console.log("load funct entered");
+        //     //document.getElementById('status').innerHTML ='loading ' + pdbid;
+        //     pv.io.fetchPdb(url, function(structure) {
+        //       window.structure = structure;
+        //       preset();
+        //       proteinViewer.centerOn(structure);
+        //     });
+        //     document.getElementById('status').innerHTML = '';
+        // }
 
         function loadProtein() {
             console.log("loadProtein");
@@ -67,13 +67,13 @@
             proteinViewer.clear();
             proteinViewer.trace('structure', structure);
         }
-        function preset() {
-            proteinViewer.clear();
-            var ligand = structure.select({rnames : ['RVP', 'SAH']});
-            proteinViewer.ballsAndSticks('ligand', ligand);
-            proteinViewer.cartoon('protein', structure);
-            proteinViewer.autoZoom();
-        }
+        // function preset() {
+        //     proteinViewer.clear();
+        //     var ligand = structure.select({rnames : ['RVP', 'SAH']});
+        //     proteinViewer.ballsAndSticks('ligand', ligand);
+        //     proteinViewer.cartoon('protein', structure);
+        //     proteinViewer.autoZoom();
+        // }
 
         document.getElementById('cartoon').onclick = cartoon;
         document.getElementById('line-trace').onclick = lineTrace;