pneumonia-XRay-Classification

A Deep Learning model to classify pneumonia in X-Ray images.

Dataset

The Dataset is publicly available from Kaggle and can be downloaded from here.

Setup

Anaconda environment

Import the environment using the requirements.yaml file using the Anaconda Navigator GUI or you can enter these commands in your shell:

$ conda env create -f requirements.yaml

Folder Structure

┌───Code/
│   ├───checkpoints/
│   │   ├───alexnet/
│   │   ├───cnn/
│   │   ├───mlp/
│   │   └───resnext/
│   ├───figs/
│   ├───logs/
│   │   ├───alexnet/
│   │   │   └───eval_logs/
│   │   ├───cnn/
│   │   │   └───eval_logs/
│   │   ├───mlp/
│   │   │   └───eval_logs/
│   │   └───resnext/
│   │       └───eval_logs/
│   ├───models/
│   └───utils/
└───Datasets/
    └───chest_xray/
        ├───test/
        │   ├───NORMAL/
        │   └───PNEUMONIA/
        ├───train/
        │   ├───NORMAL/
        │   └───PNEUMONIA/
        └───val/
            ├───NORMAL/
            └───PNEUMONIA/

How to run

• After activating the python environment, start a jupyter notebook and open RUN.ipynb.

Contributors

• Kacper Twardowski
• Zachary O'Connor
• Sabeer Bakir