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Nextflow_rnaseqfus


Fusion genes identification pipeline at center for molecular diagnostics at Region Skane. Current version of pipeline uses fusion catcher and Star fusion at default setting to identify fusion events in tumor samples - hematological and solid cancers. Current version of the pipeline runs as shown here

Active nextflow dsl=2 based development is underway to identify artefacts and rescue missed fusion events with parameter optimization and/or additional of new callers. New release of the pipeline is expected by the end of Septemeber.

Check the documentation for further information regarding the pipeline configuration and paratmeters.

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Fusion genes identification pipeline

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  • Perl 54.2%
  • Nextflow 21.5%
  • R 17.0%
  • Shell 4.5%
  • Singularity 2.8%