make test.config simpler and set the different options in ci.yml

sailepradh · Apr 13, 2022 · 6bde30c · 6bde30c
1 parent 69ea09d
commit 6bde30c
Showing 1 changed file with 0 additions and 11 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -21,16 +21,5 @@ params {
 
     // Input data
     input            = 'assets/samplesheet_valid.csv'
-    build_references = true
-    arriba           = true
-    genomes_base     = './results/references'
 
-    // Genome references
-    genome              = 'GRCh38'
-    fasta               = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
-    fasta_fai           = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta.fai'
-    gtf                 = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.gtf'
-
-    //STAR index
-    // star_index          = 'https://github.com/nf-core/test-datasets/raw/modules/data/genomics/homo_sapiens/genome/index/star/star.tar.gz'
 }