publish samtools index into different dirs by alias

sailepradh · Mar 21, 2022 · c262031 · c262031
1 parent bbec348
commit c262031
Showing 1 changed file with 16 additions and 0 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -131,6 +131,22 @@ process {
         ]
     }
 
+    withName: SAMTOOLS_INDEX_FOR_ARRIBA {
+        publishDir = [
+            path: { "${params.outdir}/samtools_index_for_arriba" },
+            mode: 'copy',
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+        ]
+    }
+
+    withName: SAMTOOLS_INDEX_FOR_QC {
+        publishDir = [
+            path: { "${params.outdir}/samtools_index_for_qc" },
+            mode: 'copy',
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+        ]
+    }
+
     withName: SAMTOOLS_SORT_FOR_ARRIBA {
         ext.prefix = { "${meta.id}_sorted" }
         publishDir = [