Commits

Branch selector

 develop

User selector

pd3

Datepicker

All time

Commit History

Commits on Dec 11, 2024

• Preserve phasing when mergin half-missing genotypes

  Show description for 6559a12
  pd3

  committed
  6559a12

• [minor] Sort test output to make output consistent across platforms

  pd3

  committed
  313c597

• Fix failing test, plugin directory was not included

  pd3

  committed
  e4e2abf

• Replace a fixed buffer with a dynamically allocated one

  Show description for ff15927
  pd3

  committed
  ff15927

• Extend transcript boundaries instead of skipping the transcript

  Show description for e686d37
  pd3

  committed
  e686d37

• Exclude features outside transcript boundaries

  Show description for d6cf97b
  pd3

  committed
  d6cf97b

Commits on Dec 3, 2024

• Minor documentation fix, see #164

  pd3

  committed
  3351124

• Check out-of-bound memory access, adds to b29c54c

  pd3

  committed
  b482b77

• Fix BCF output

  Show description for d98d58f
  pd3

  committed
  d98d58f

Commits on Dec 2, 2024

• Rename noise-profile plugin

  Show description for 25aff97
  pd3

  committed
  25aff97

Commits on Dec 1, 2024

• Deal with an assert caused by a very short start exon

  Show description for b29c54c
  pd3

  committed
  b29c54c

Commits on Nov 17, 2024

• Add test for breakend detection

  Show description for a5bc0ea
  pd3

  committed
  a5bc0ea

Commits on Nov 16, 2024

• Fix a bug in genotype filtering

  Show description for f602523
  pd3

  committed
  f602523

Commits on Oct 31, 2024

• Complain if Number=R,A assumptions not met

  Show description for 825a5dc
  pd3

  committed
  825a5dc

Commits on Oct 26, 2024

• Merge branch 'develop' of pd3-github:samtools/bcftools into develop

  pd3

  committed
  c46a8ef

• Support for setting missing genotypes with arbitrary ploidy

  Show description for 0148624
  pd3

  committed
  0148624

Commits on Oct 22, 2024

• Update documentation

  pd3

  committed
  4735097

• Add support for matching VCF lines by ID

  Show description for 3d994d3
  pd3

  committed
  3d994d3

Commits on Oct 14, 2024

• Print header for debugging output with -vvv and warn when -i is not used

  pd3

  committed
  4dd56e3

Commits on Oct 10, 2024

• Stop referring to -d none by the documentation

  Show description for e60c622
  pd3

  committed
  e60c622

Commits on Oct 2, 2024

• Update NEWS

  pd3

  committed
  ef8b974

• Merge branch 'bt-2271-query-expr' into develop

  pd3

  committed
  c6cbcc7

• Add support for -i/-e filtering functions

  Show description for 6be9e81
  pd3

  committed
  6be9e81

Commits on Sep 16, 2024

• [MINOR] update NEWS and usage page

  pd3

  committed
  9d31418

• Update NEWS and man page

  pd3

  committed
  5e585b3

• Merge noise-profile

  pd3

  committed
  8a51761

Commits on Sep 10, 2024

• Initial commmit, support for -i/-e functions (such as mean) in query format output

  pd3

  committed
  5852c81

Commits on Sep 9, 2024

• Do not require -s - when there were no samples in the VCF

  Show description for 17b6563
  pd3

  committed
  17b6563

• Make empty region list result in empty VCF

  Show description for fdac1d4
  pd3

  committed
  fdac1d4

Commits on Sep 6, 2024

• Resolve merge conflicts

  pd3

  committed
  4cc4f0e

• Add another test

  pd3

  committed
  407c0fc

• Follow the recommended order of operations

  Show description for ca6ebec
  pd3

  committed
  ca6ebec

Commits on Sep 4, 2024

• Fix a bug in --strictly-novel

  Show description for 418e7fc
  pd3

  committed
  418e7fc

• Detect mosaic chrX variants in males

  pd3

  committed
  bbe4a1e

Commits on Sep 2, 2024

• Should gave added 1-QS, not QS

  Show description for abdfbf3
  pd3

  committed
  abdfbf3

Pagination

PreviousNext