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Commits on Aug 6, 2020

• Output mapping quality with XB

  nh13

  authored
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Commits on Jul 2, 2020

• added MIT license to some non-GPL source files

  lh3

  committed
  436aceb

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Commits on Apr 2, 2018

• optionally write XB to include alignment score

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  lh3

  committed
  eb7dbc1

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Commits on Jan 27, 2016

• removed the pbread mode

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  lh3

  committed
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Commits on Oct 20, 2014

• r929: added simplified LAST-like seeding

  lh3

  committed
  038af2a

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Commits on Sep 30, 2014

• r878: XA is given to the best alignment

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  lh3

  committed
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Commits on Sep 19, 2014

• r867: fixed a few bugs; added ALT hits to XA

  lh3

  committed
  9af3606

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Commits on Sep 17, 2014

• r849: the pa tag now gives a number

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  lh3

  committed
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Commits on Sep 15, 2014

• r824: ALT mapping seems working

  lh3

  committed
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Commits on Aug 25, 2014

• r809: new strategy for the -a mode

  lh3

  committed
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Commits on May 16, 2014

• r778: reduced the number of alloc() calls a bit

  lh3

  committed
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Commits on May 11, 2014

• r762: cleanup for the new release; unfinished

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  lh3

  committed
  39a6cd5

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Commits on Apr 30, 2014

• r738: output multi-map in the XA tag (SE only)

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  lh3

  committed
  c6c943f

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Commits on Apr 16, 2014

• r723: merge adjacent hits

  lh3

  committed
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Commits on Apr 11, 2014

• Merge branch 'dev' into layout

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  lh3

  committed
  7d25fe2

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• dev-474: fixed a typo

  lh3

  committed
  e80bccc

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• dev-473: added a few assertions

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  lh3

  committed
  f02cd42

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• dev-472: get rid of bwa_fix_xref()

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  lh3

  committed
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Commits on Apr 10, 2014

• layout-477: output unit score, not the raw score

  lh3

  committed
  e2d0c99

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• dev-470: don't stop on bwa_fix_xref2() failures

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  lh3

  committed
  ccbbe48

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Commits on Apr 8, 2014

• dev-465: a new output format for read overlap

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  lh3

  committed
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