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Issues list

clustering accounting for spatial coordinates enhancement ✨ New feature or request graph 🕸️
#13 opened Sep 9, 2020 by giovp updated Jun 12, 2024 Tools to analyze spatial graph
@SabrinaRichter @M0hammadL
12
UnidentifiedImageError when reading in Nanostring CosMx Data I/O 💿
#845 opened Jun 26, 2024 by keiven-kun updated Jul 5, 2024
@giovp
2
Remove dots below certain expression level threshold plot 🌺 related to plotting sdata compat 🌌
#635 opened Feb 1, 2023 by hndyilm updated Jul 7, 2024
@giovp
1
Co-occurrence gives 'nan' if n_splits>1 in large dataset bug 🐛 Something isn't working graph 🕸️
#689 opened May 10, 2023 by Mena-SA-Kamel updated Jul 7, 2024
@giovp
1
bug loading vizgen data I/O 💿 sdata compat 🌌
#673 opened Mar 24, 2023 by mkunst23 updated Jul 7, 2024
@michalk8
13
Query Regarding Logic of calculating radius in generate_spot_crops() image 🔬 sdata compat 🌌
#725 opened Jul 17, 2023 by JieShengm updated Jul 7, 2024
1
Nhood composition comparison across conditions? sdata compat 🌌
#483 opened Mar 17, 2022 by annamath updated Jul 7, 2024
@giovp
5
Improve import speed enhancement ✨ New feature or request
#462 opened Feb 24, 2022 by michalk8 updated Jul 7, 2024
@michalk8
3
cellpose: how to extract features after segmentation image 🔬
#694 opened May 25, 2023 by WT215 updated Jul 7, 2024
@giovp
1
running examples in CI maint 🏗️
#707 opened Jun 15, 2023 by giovp updated Jul 7, 2024
@LLehner
Issues of mask_circle in function squidpy.im.calculate_image_features image 🔬 segmentation 💠
#751 opened Sep 17, 2023 by ZiqianZheng updated Jul 7, 2024
@michalk8
How to analyze over 100 images? image 🔬
#750 opened Sep 15, 2023 by sailseem updated Jul 7, 2024
@giovp
sq.gr.co_occurrence gives different results for n_splits=1 and n_splits>1 diff analysis 📊 graph 🕸️
#755 opened Oct 1, 2023 by JuergenLippoldt updated Jul 7, 2024
@michalk8
1
Error plotting selected clusters on top on image layer plot 🌺 related to plotting
#716 opened Jun 22, 2023 by jnmark updated Jul 7, 2024
@michalk8
1
sq.pl.spatial_segment: wrong cells selected by groups parameter plot 🌺 related to plotting
#770 opened Nov 10, 2023 by colganwi updated Jul 7, 2024
@michalk8
1
Analysing 3D data enhancement ✨ New feature or request squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#788 opened Jan 8, 2024 by timtreis updated Jul 7, 2024
2 tasks
Allow for spatial perturbation screen analysis diff analysis 📊 squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#790 opened Jan 8, 2024 by timtreis updated Jul 7, 2024
6
sq.pl.spatial_scatter return_ax = True not working plot 🌺 related to plotting
#791 opened Jan 11, 2024 by parser-algebra-0m updated Jul 7, 2024
@giovp
sq.im.calculate_image_features() - scale factors for cropped image image 🔬
#676 opened Apr 13, 2023 by elise-smith updated Jul 7, 2024
@michalk8
1
EuroPython talk that can give feature insights to SquidPy plot 🌺 related to plotting sdata compat 🌌
#800 opened Feb 15, 2024 by inaciomdrs updated Jul 7, 2024
2
Ripley L measure with n_observations diff analysis 📊 graph 🕸️
#813 opened Mar 25, 2024 by georgezakinih updated Jul 7, 2024
@giovp
Reading in MERSCOPE sample data with squidpy.read.vizgen() doesn't work for every dataset? I/O 💿 sdata compat 🌌
#686 opened May 9, 2023 by Laura-Waechter updated Jul 7, 2024
@giovp
9
Clustering according to image features graph 🕸️
#822 opened Apr 25, 2024 by gboscagli updated Jul 7, 2024
@giovp
Cannot load Visium_FFPE_Mouse_Brain,Visium_FFPE_Human_Normal_Prostate. Error: HTTP Error 403: Forbidden deprecation PR deprecates a feature maint 🏗️
#782 opened Dec 12, 2023 by Rayjrz updated Jul 7, 2024
@michalk8
3
sort_order for pl.spatial_scatter plot 🌺 related to plotting
#824 opened May 4, 2024 by JBreunig updated Jul 7, 2024
1
ProTip! no:milestone will show everything without a milestone.