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Update R_code_boxplots-heatmap-VolcanoPlot.md
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asilvestris84 authored Dec 17, 2019
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<h1 text-align="center">R code for box plot representation of Editing Index distributions</h1>

Data table should be tab delimited and formatted as <a href="https://github.com/BioinfoUNIBA/QEdit/blob/master/Figures_R_code/AEI_GTEx_selected.txt"> AEI_GTEx_selected.txt</a>
Data table should be tab delimited and formatted as <a href="https://github.com/BioinfoUNIBA/QEdit/blob/master/Figures_R_code/AEI_GTEx_selected.txt"> AEI_GTEx_selected.txt.</a>

<pre>library (ggplot2)
data <- read.table("AEI_GTEx_selected.txt", header=TRUE, check.names = FALSE, sep = "\t")
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<img src="https://github.com/BioinfoUNIBA/QEdit/blob/master/Figures_R_code/PositionEffect2.png">
<h1 text-align="center">R code for heatmap showing editing levels at recoding sites</h1>

Data table, containing editing levels (%) at recoding poisitions covered by at least 10 reads, should be tab delimited and formatted as <a href="https://github.com/BioinfoUNIBA/QEdit/blob/master/Figures_R_code/filtered_full_recoding_table2.txt"> filtered_full_recoding_table.txt</a>
Data table, containing editing levels (%) at recoding poisitions covered by at least 10 reads, should be tab delimited and formatted as <a href="https://github.com/BioinfoUNIBA/QEdit/blob/master/Figures_R_code/filtered_full_recoding_table2.txt"> filtered_full_recoding_table.txt.</a>

<pre>library(ComplexHeatmap)
library(circlize)
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