CoNekT: Coexpression Network Toolkit

CoNekT, the Coexpression Network Toolkit, documentation and code.

If you use CoNekT in your research please cite: CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. Proost et al. 2018. ( https://doi.org/10.1093/nar/gky336 )

What is CoNekT ?

CoNekT is an online platform that allows users to browse expression profiles, study expression specificty, co-expression networks and more across different species.

Here you can find tutorials how to use the public version along with the source-code and build instructions that allow you to host your own instance with other species or in-house data.

Changelog

v1.1

• General tree import included
• Updated dependencies that had known security vulnerabilities and adjusted code where necessary
• Various small tweaks

v1.0

• Initial release

Tutorials

• The Basics
• Expression profiles, heatmaps and specificity
• Gene Families and Phylogenetic trees
• Comparing specificity
• Coexpression Networks and Clusters

Anything missing ? Further questions ? Don't hesitate to contact us.

Setting up CoNekT

Below are the instructions to set up and host your own CoNekT instance.

• Linux Installation instructions
• Windows Installation instructions
• Run website
• Build CoNekT: Upload your data to the platform using the Admin interface

Optional steps (recommended for production environments)

• Connecting with MySQL/MariaDB
• Setting up CoNekT with apache and mod_wsgi

Acknowledgements

CoNekT is based upon many open-source projects, check the full list here.

Contact

Issues are the preferred way to report bugs and errors, start a discussion for suggestions and feedback.

• Sebastian Proost ( https://www.kuleuven.be/wieiswie/en/person/00123248 )