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Commits on Aug 6, 2021

• Update our DeepTrio case study GLnexus config to be DeepVariant_unfiltered.

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Commits on Jul 25, 2021

• Update a few *-case-study.md files.

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  pichuan

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Commits on Mar 15, 2021

• Update truth version to v4.2.1.

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  pichuan

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• Add --pass-only to all hap.py evaluation for DeepVariant and DeepTrio.

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  pichuan

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• Re-run and update the documentation with the new hap.py version and new truth to make sure results are updated.

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  pichuan

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Commits on Mar 10, 2021

• Fix typo for GLnexus.

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  pichuan

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Commits on Mar 9, 2021

• Update hap.py to use jmcdani20/hap.py:v0.3.12

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  pichuan

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Commits on Dec 7, 2020

• Minor updates to DeepTrio Pacbio case study.

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  sgoe1

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Commits on Dec 5, 2020

• Change happy output directory in DeepTrio case studies.

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  akolesnikov

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Commits on Nov 25, 2020

• Add the flag --use_hp_information for DeepTrio.

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  pichuan

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Commits on Oct 29, 2020

• Incorporating feedback from William Rowell ([email protected]).

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  pichuan

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Commits on Oct 28, 2020

• DeepTrio PacBio case study. First draft.

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  akolesnikov

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