Merge pull request Ensembl#172 from Ensembl/feature/lepidoptera_basic…

…_repeat_counts Added lepidoptera repeat counts.
sgiorgetti · Jan 7, 2021 · 926e3f0 · 926e3f0
2 parents 7e54158 + bfc94f8
commit 926e3f0
Showing 1 changed file with 15 additions and 0 deletions.
diff --git a/modules/Bio/EnsEMBL/Analysis/Hive/Config/SanityChecksStatic.pm b/modules/Bio/EnsEMBL/Analysis/Hive/Config/SanityChecksStatic.pm
@@ -134,6 +134,21 @@ sub _master_config {
        'unigene'                    => [3000000, 'dna align'],
        'vertrna'                    => [3000000, 'dna align']
      },
+
+     'lepidoptera_basic' => {
+       'cpg'                        => [2000, 'simple'],
+       'eponine'                    => [30000, 'simple'],
+       'trnascan'                   => [300, 'simple'],
+       'genscan'                    => [10000, 'prediction transcript'],
+       'dust'                       => [500000, 'repeat'],
+       'repeatdetector'             => [200000, 'repeat'],
+       #'repeatmask_repbase_' => [1500000, 'repeat'],
+       'trf'                        => [50000, 'repeat'],
+       'uniprot'                    => [1, 'protein align'],
+       'unigene'                    => [1, 'dna align'],
+       'vertrna'                    => [1, 'dna align']
+     },
+
    },
 
   'gene_db_checks' => {