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HiveUTRAddition, added _star_rs_layer_ regexp so the rnaseq models fr…
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…om the scallop pipeline are used as rnaseq_donor.
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ens-carlos authored Jul 29, 2021
1 parent b08351d commit b1f66e3
Showing 1 changed file with 1 addition and 1 deletion.
Original file line number Diff line number Diff line change
Expand Up @@ -1799,7 +1799,7 @@ sub filter_input_genes {
my $biotype = "";
if($dbname =~ /\_cdna\_/ || $dbname =~ /\_lrfinal\_/) {
$biotype = "cdna_donor";
} elsif($dbname =~ /\_rnalayer\_/ || $dbname =~ /\_rnaseq\_/) {
} elsif($dbname =~ /\_rnalayer\_/ || $dbname =~ /\_rnaseq\_/ || $dbname =~ /\_star\_rs\_layer\_/) {
$biotype = "rnaseq_donor";
} else {
$self->throw("Found an unexpected dbname type for the donor db. Name: ".$dbname);
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