bioinformatics R test code
https://github.com/compbiomed/singleCellTK 单细胞RNA-seq数据分析代码库
https://github.com/chuiqin/irGSEA Integrate all single cell rank-based gene set enrichment analysis and easy to visualize the results.
https://github.com/ShixiangWang/sigminer 基因组mutation signature analysis代码库
https://github.com/Niinleslie/MesKit A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
https://github.com/mireia-bioinfo/pipelineNGS R代码封装的CHIP-seq处理流程
https://github.com/GenEpi-GenPhySE/epistack epistack软件包的主要目标是可视化基因组轨迹的堆叠（ChIP-seq, ATAC-seq, DNA methyation or genomic conservation data）
https://github.com/shijianasdf/meowmics R表观组学数据分析
https://github.com/statnet R网络分析代码库
https://github.com/xlucpu/MOVICS Multi-Omics integration and VIsualization in Cancer Subtyping
https://github.com/icbi-lab Institute of Bioinformatics @ Medical University of Innsbruck
https://github.com/rohitsuratekar/CardioPipeLine SnakeMake python RNA-seq pipeline
https://github.com/NWPU-903PR/m6Aexpress
https://github.com/DongqiangZeng0808/Blasso
https://github.com/IOBR/IOBR IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
https://github.com/Ming-Lian :免疫学相关知识以及各种测序数据的处理流程，其中MeRIP-seq处理很经典
https://github.com/rnabioco?page=1 RNA Bioscience Initiative
https://github.com/shijianasdf/GREP2 R+shell RNA-seq pipeline搭建
https://github.com/shijianasdf/Rnaseq 别人开发的RNA-seq处理分析包
https://github.com/mlr-org R语言机器学习集大成者
https://github.com/jmzeng1314 生信技能树创始人
https://github.com/huangwb8 ：lucky BasicBioinformaticsAnalysisFromZhongShan
https://github.com/crazyhottommy 此乃大神，整合几乎所有生信分析的pipeline，以及相关领域的研究成果和科研动态，每个项目必属精品
https://github.com/tgirke/systemPipeR RNA-seq和chip-seq处理分析toolkit，功能很强大，组长大量代码都是从这里扒来的，并且tgirke做了大量生信分析的教程，网址如下https://girke.bioinformatics.ucr.edu/GEN242/
https://github.com/shijianasdf/XSLab-docs 刘雪松上海实验室
https://github.com/rkhetani ：哈佛大学教授
https://github.com/hbctraining : Teaching materials at the Harvard Chan Bioinformatics Core
https://github.com/hbctraining/In-depth-NGS-Data-Analysis-Course : In-depth NGS Data Analysis Course
https://github.com/genomicsclass/labs ：哈佛大学
https://github.com/ekg/alignment-and-variant-calling-tutorial
https://github.com/mikelove/bioc-f1000r/blob/master/bioc-f1000r.tsv f1000 bioninformatics workflow
https://github.com/shijianasdf/ezfun 和 https://github.com/shijianasdf/clintable 两个临床分析常用函数集合，目前clintable改名gtsummary,gtsummary绝对是临床分析利器
https://github.com/john-guerra d3.js可视化 navio
https://github.com/biojs BioJS is an open-source project for bioinformatics data on the web. Its goal is to develop an open-source library of JavaScript components to visualise biological data. web前台生信数据可视化js插件集，可以说牛逼闪闪
https://github.com/likelet?tab=repositories circRNApipe
https://github.com/gerstung-lab 基因组分析实验室
bioinformatics-pipeline bioinformatics rna-seq circrna rna-seq-data rna-seq-analysis rna-seq-pipeline gene-expression circrnas circular-rna transcriptomics circseq