Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo

Lime: Explaining the predictions of any machine learning classifier

A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

机器学习、深度学习的学习路径及知识总结

人工智能学习路线图，整理近200个实战案例与项目，免费提供配套教材，零基础入门，就业实战！包括：Python，数学，机器学习，数据分析，深度学习，计算机视觉，自然语言处理，PyTorch tensorflow machine-learning,deep-learning data-analysis data-mining mathematics data-science artificial…

Tidy Plots for Scientific Papers

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

plotthis is an R package that is built upon ggplot2 and other plotting packages.

GeneCompass

Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Learning Shell，Python，Golang，System，Network

数学建模常见模型及Python实现

Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

Predicting chromatin structure and developmental potential using single-cell chromatin accessibility

The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/

【国赛】【美赛】数学建模相关算法 MATLAB实现（2018年初整理）

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

Machine learning-based integration model with elegant performance

数学建模，数学建模竞赛优秀论文，数学建模算法，LaTeX论文模板，算法思维导图，参考书籍，Matlab软件教程，PPT

研究生数学建模，本科生数学建模、数学建模竞赛优秀论文，数学建模算法，LaTeX论文模板，算法思维导图，参考书籍，Matlab软件教程，PPT

图神经网络、图卷积网络、图注意力网络、图自编码网络、时空图神经网络等论文合集。

An R package for visualising cell-cell interactions

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

《Hello 算法》：动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新，English version ongoing

Python机器学习算法技术博客，有原创干货！有code实践！ 【更多内容敬请关注公众号 "算法进阶"】