[pre-commit.ci] pre-commit autoupdate (scverse#3038)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Philipp A <[email protected]>

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.1
+    rev: v0.4.2
     hooks:
     -   id: ruff
         types_or: [python, pyi, jupyter]

scanpy/external/exporting.py

@@ -102,7 +102,7 @@ def spring_project(
                 )
             else:
                 raise ValueError(
-                    "Run the specified embedding method `%s` first." % embedding_method
+                    f"Run the specified embedding method `{embedding_method}` first."
                 )
 
     coords = adata.obsm[embedding_method]
@@ -332,13 +332,13 @@ def _write_graph(filename, n_nodes, edges):
 def _write_edges(filename, edges):
     with Path(filename).open("w") as f:
         for e in edges:
-            f.write("%i;%i\n" % (e[0], e[1]))
+            f.write(f"{e[0]};{e[1]}\n")
 
 
 def _write_color_tracks(ctracks, fname):
     out = []
     for name, score in ctracks.items():
-        line = name + "," + ",".join(["%.3f" % x for x in score])
+        line = f"{name}," + ",".join(f"{x:.3f}" for x in score)
         out += [line]
     out = sorted(out, key=lambda x: x.split(",")[0])
     Path(fname).write_text("\n".join(out))

scanpy/plotting/_scrublet.py

@@ -104,7 +104,7 @@ def scrublet_score_distribution(
             doublet_scores_sim = adata.uns["scrublet"]["batches"][batch_key][
                 "doublet_scores_sim"
             ]
-            axis_lab_suffix = " (%s)" % batch_key
+            axis_lab_suffix = f" ({batch_key})"
             obs_ax = axs[idx][0]
             sim_ax = axs[idx][1]