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Commits on Jul 5, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for a00fd76
  pre-commit-ci[bot]

  committed
  a00fd76

Commits on Jul 2, 2024

• add the layer argument for sc.tl.score_genes_cell_cycle

  shinthor

  committed
  fcd3399

• Unpin numpy 2 (scverse#3115)

  Show description for 4b090c0
  

  flying-sheep

  and

  ilan-gold

  authored
  4b090c0

• [pre-commit.ci] pre-commit autoupdate (scverse#3131)

  Show description for 2046129
  

  pre-commit-ci[bot]

  and

  ilan-gold

  authored
  2046129

• (chore): add preparation-of-release documentation (scverse#3122)

  Show description for 8d9a5f0
  

  ilan-gold

  and

  flying-sheep

  authored
  8d9a5f0

Commits on Jul 1, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#3119)

  Show description for 8f10ec1
  pre-commit-ci[bot]

  authored
  8f10ec1

Commits on Jun 28, 2024

• hvg flavors seurat and cellranger with batch: bug in subset (scverse#3042)

  Show description for fdfb9a1
  

  3 peopleauthored
  fdfb9a1

Commits on Jun 25, 2024

• Skip scanorama on Python 3.9 (scverse#3125)

  flying-sheep

  authored
  896e249

• (chore): prepare release notes for 0.10.2 release (scverse#3121)

  ilan-gold

  authored
  5cd9a44

Commits on Jun 18, 2024

• speedup(~7x) of the clipping array inside scaling function (scverse#3100)

  Show description for ad657ed
  

  ashish615

  and

  Intron7

  authored
  ad657ed

• [pre-commit.ci] pre-commit autoupdate (scverse#3109)

  Show description for 3f2af97
  

  pre-commit-ci[bot]

  and

  flying-sheep

  authored
  3f2af97

Commits on Jun 17, 2024

• Fix dotplot totals for pandas 1.x (scverse#3101)

  flying-sheep

  authored
  126d730

Commits on Jun 13, 2024

• Move to src / tests layout (scverse#3092)

  flying-sheep

  authored
  f03d4f4

Commits on Jun 11, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#3104)

  Show description for 5d5d873
  

  pre-commit-ci[bot]

  and

  flying-sheep

  authored
  5d5d873

Commits on Jun 5, 2024

• Add layer argument to score_genes() (scverse#2921)

  Show description for 706d4ef
  

  3 peopleauthored
  706d4ef

Commits on Jun 4, 2024

• Simplify score_genes (scverse#3097)

  flying-sheep

  authored
  21aecd9

• Document datasets (scverse#3060)

  flying-sheep

  authored
  4f40d68

• [pre-commit.ci] pre-commit autoupdate (scverse#3093)

  Show description for 8d046ff
  pre-commit-ci[bot]

  authored
  8d046ff

Commits on Jun 3, 2024

• Updated missing params in docstrings (scverse#2888)

  Steve-Cheney

  authored
  de38381

• Fix and test zappy support (scverse#3089)

  flying-sheep

  authored
  f8a5726

• (fix): write out full PCA results when not run before neighbors (scverse#3079)

  Show description for 3d03f2e
  

  ilan-gold

  and

  flying-sheep

  authored
  3d03f2e

• fix .A removal (scverse#3084)

  flying-sheep

  authored
  874d99b

Commits on May 31, 2024

• Hvg seurat v3 numba kernel (scverse#3017)

  Show description for 5dc489d
  

  3 peopleauthored
  5dc489d

Commits on May 28, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#3078)

  Show description for a20334f
  pre-commit-ci[bot]

  authored
  a20334f

Commits on May 21, 2024

• (feat): raising errors where backed is not supported (scverse#3048)

  Show description for 3ba3f46
  

  ilan-gold

  and

  flying-sheep

  authored
  3ba3f46

Commits on May 17, 2024

• Import types only in if TYPE_CHECKING blocks (scverse#3064)

  Show description for 23c20bc
  flying-sheep

  authored
  23c20bc

• Upper-bound numpy below 2 for now (scverse#3065)

  flying-sheep

  authored
  cc26569

Commits on May 14, 2024

• Fix doctests (scverse#3057)

  flying-sheep

  authored
  8fe4c3a

• Speedup scrublet (scverse#3044)

  Intron7

  authored
  fb79fed

• Extend benchmarks from basic tutorial (scverse#3031)

  flying-sheep

  authored
  c26480e

• [pre-commit.ci] pre-commit autoupdate (scverse#3053)

  Show description for e8e334a
  pre-commit-ci[bot]

  authored
  e8e334a

Commits on May 10, 2024

• Fix import of issparse (scverse#3047)

  flying-sheep

  authored
  d2a5368

Commits on May 7, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#3045)

  Show description for 9714250
  pre-commit-ci[bot]

  authored
  9714250

Commits on Apr 30, 2024

• Add triage label to user created issues (scverse#3040)

  flying-sheep

  authored
  0d4554b

• [pre-commit.ci] pre-commit autoupdate (scverse#3038)

  Show description for c3cfa74
  

  pre-commit-ci[bot]

  and

  flying-sheep

  authored
  c3cfa74

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