Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas

⚡ TabPFN: Foundation Model for Tabular Data ⚡

Python playground for cell-type-specific biology

A modular framework for multimodal cross-cell-type transcriptional regulation models

An open-source RAG-based tool for chatting with your documents.

Bringing BERT into modernity via both architecture changes and scaling

Significance analysis for clustering single-cell RNA-sequencing data

LOTUS: A semantic query engine for fast and easy LLM-powered data processing

MatriCom: matrisome communication in single-cell RNA-seq data

Python tool for converting files and office documents to Markdown.

Join subcellular Visium HD bins into cells

Manage & Modify {ggplot2} Figures Using {ggfigdone}

Code from the paper "You need 27 tickets to guarantee a win on the UK National Lottery"

AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all levels

Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which estimates annotation congruence using a rich but often overlook…

Source code for <Large language models surpass human experts in predicting neuroscience results>

CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration

Snakemake workflow management system and CLI generation tool

Python package for Probe set selection for targeted spatial transcriptomics.

BioNeMo Framework: For building and adapting AI models in drug discovery at scale

BiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities