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Commits on Mar 23, 2021

• update rsem_ref_index (broadinstitute#267)

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Commits on Mar 17, 2021

• Update multi ss2 PR test inputs to confirm that the references are correct and … (broadinstitute#263)

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Commits on Mar 16, 2021

• gl-1383 move GDCWholeGenomeSomaticSingleSample.wdl out of beta pipelines and remove miniwdl check (broadinstitute#255)

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Commits on Mar 3, 2021

• update expected bam hash (broadinstitute#256)

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Commits on Feb 25, 2021

• Revert "remove InternalTasks.UpdateChipWellBarcodeIndex to see if pullapprove works"

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• remove InternalTasks.UpdateChipWellBarcodeIndex to see if pullapprove works

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Commits on Feb 24, 2021

• Merge pull request broadinstitute#240 from broadinstitute/np_gl-1394_turn_on_pullapprove

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• Merge branch 'develop' into np_gl-1394_turn_on_pullapprove

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Commits on Feb 17, 2021

• Merge remote-tracking branch 'origin/np_gl-1394_turn_on_pullapprove' into np_gl-1394_turn_on_pullapprove

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• added chips github username

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• Merge branch 'develop' into np_gl-1394_turn_on_pullapprove

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• add cram_to_unmapped_bam to process_pullapprove.sh and to pullapprove_template.yml, also add gdc owners to pullapprove_template.yml. remove yossi

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Commits on Feb 16, 2021

• add gdc pipeline to process_pullapprove.sh and run process_pullapprove.sh script to update .pullapprove.yml

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• add gdc pipeline to process_pullapprove.sh and run process_pullapprove.sh script to update .pullapprove.yml

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• update paths for process_pullapprove.sh

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Commits on Feb 11, 2021

• Merge branch 'staging' into develop

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Commits on Feb 10, 2021

• add cemba pipeline to dockstore yml (broadinstitute#233)

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Commits on Feb 5, 2021

• Np gl 263 somatic genome tested on pr (broadinstitute#211)

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Commits on Jan 19, 2021

• gl-1344_add_CollectInsertSizeMetrics_to_GDC_pipeline (broadinstitute#207)

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Commits on Jan 11, 2021

• adding womtool check (broadinstitute#196)

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Commits on Oct 27, 2020

• Merge pull request broadinstitute#127 from broadinstitute/np_gl-1247_global_attrs

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Commits on Oct 26, 2020

• fix indentation and update dockers

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• updating global attributes (input_id and input_name) as column attributes

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Commits on Oct 6, 2020

• Merge pull request broadinstitute#57 from broadinstitute/gl-707_make_sctools_consitent_in_optimus

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Commits on Oct 5, 2020

• updated the version and the changelog

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• update the docker in the new FastqProcessing.wdl

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• updating bam_hash

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• Merge branch 'develop' into gl-707_make_sctools_consitent_in_optimus

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Commits on Oct 2, 2020

• trying out newer renamed docker in rest of task wdls, and also updating the bam hash truth

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• trying out renamed docker in Attach10xBarcodes.wdl. adding this new docker to the next task, SplitBamByCellBarcode.wdl

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• trying out newER docker in Attach10xBarcodes.wdl

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Commits on Sep 28, 2020

• trying out new docker in CreateCountMatrix.wdl

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• trying out new docker in SequenceDataWithMoleculeTagMetrics.wdl

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• trying out new docker in TagSortBam.wdl and updating bam_hash test input truth

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Commits on Sep 15, 2020

• trying out new docker in SplitBamByCellBarcode.wdl

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