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BuildIndices_develop

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update rsem_ref_index (broadinstitute#267)

choosing to merge this in despite failing pipeline release validation. This pipeline isnt released so there is no changelog.

WholeGenomeReprocessing_v2.3.4

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Merge pull request broadinstitute#261 from broadinstitute/staging

staging->master

WholeGenomeGermlineSingleSample_v2.3.2

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Merge pull request broadinstitute#261 from broadinstitute/staging

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Optimus_v4.2.3

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Merge pull request broadinstitute#261 from broadinstitute/staging

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GDCWholeGenomeSomaticSingleSample_develop

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gl-1383 move GDCWholeGenomeSomaticSingleSample.wdl out of beta pipeli…

…nes and remove miniwdl check (broadinstitute#255)

* moved GDCWholeGenomeSomaticSingleSample.wdl out of beta into pipelines, updated changelog/version, updated paths in scala test/pullapprove template

* make mem input not optional

* remove miniwdl check because we are already checking our wdls with womtools

* move gdc.png file to pipelines/

* move to /warp/pipelines/broad/dna_seq/somatic/ instead

* udpate imports

* not 2020 anymore

ExternalWholeGenomeReprocessing_v1.3.4

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Merge pull request broadinstitute#261 from broadinstitute/staging

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ExternalExomeReprocessing_v2.4.4

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Merge pull request broadinstitute#261 from broadinstitute/staging

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ExomeReprocessing_v2.4.4

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Merge pull request broadinstitute#261 from broadinstitute/staging

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ExomeGermlineSingleSample_v2.4.2

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Merge pull request broadinstitute#261 from broadinstitute/staging

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CEMBA_v1.1.1

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Merge pull request broadinstitute#261 from broadinstitute/staging

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